View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_5 (Length: 441)
Name: NF12033_low_5
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_5 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 105 - 432
Target Start/End: Original strand, 31787412 - 31787745
Alignment:
| Q |
105 |
atagtaaggaggaaatcaaaagtgaaagggaaatcgatggataa----ttattgaattgtgcttacactgtttgtctctcttacaaannnnnnnnnnnat |
200 |
Q |
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| T |
31787412 |
atagtaaggaggaaatcaaaagtgaaagggaaatcgatggataagcaattattgaattgtgcttacactgtttgtctctcttacaa---tttttttttat |
31787508 |
T |
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| Q |
201 |
acaagtatatatgaaaatgttttctcggacaaaatttccaacatcaacatggtgtatatacgaatgaagaaattagttgaagagtaaattttttattcaa |
300 |
Q |
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| T |
31787509 |
acaagtatatatgaaaatgttttctcggacaaaatttccaacattaacatggtgtatatacgaatgaagaaattagttgaagagtaaattttttattcaa |
31787608 |
T |
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| Q |
301 |
atgacttatttttaaaatttaacatgtttctctcctaaactctcaatccaaacacacttttaaaat-----atttgaggcagagaccaaatttcagtttt |
395 |
Q |
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| T |
31787609 |
atgacttatttttaaaatttaacatgttttctttctaaaccctcaatccaaacacactcttagaatatttaatttgaggcggagaccaaatttcagtttt |
31787708 |
T |
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| Q |
396 |
atcgacatggtcctatatttacgtgttccgttcatct |
432 |
Q |
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| T |
31787709 |
atcgacatggtcccatatttacgtgttccgttcatct |
31787745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 31786610 - 31786680
Alignment:
| Q |
18 |
aaaagtacccacgttgcaataaattgaaatgtgcctttatatggttttaagcagtacatatagtgttcacc |
88 |
Q |
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| T |
31786610 |
aaaagtacccacgttgcaataaattgaaatgtgcctttatatggttttaagcagtacatatagtgttcacc |
31786680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 3175 - 3147
Alignment:
| Q |
332 |
ctcctaaactctcaatccaaacacacttt |
360 |
Q |
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| T |
3175 |
ctcctaaactctcaatccaaacacacttt |
3147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 22022875 - 22022839
Alignment:
| Q |
332 |
ctcctaaactctcaatccaaacacacttttaaaatat |
368 |
Q |
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| T |
22022875 |
ctcctaaaccctcaatccaaacacacctttaaaatat |
22022839 |
T |
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