View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_7 (Length: 439)
Name: NF12033_low_7
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 3 - 429
Target Start/End: Complemental strand, 24414630 - 24414204
Alignment:
| Q |
3 |
tttcaaatagaagtgtcggtgctacaaagattgcatgttgcaaataattgtactttttctaatgagtacaattgtttcatcaatttgacatgagggaata |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24414630 |
tttcaaatagaagtgtcggtgctacaaagattgcatgttgcaaataattgtactttttctgatgagtacaattgtttcatcaatttgacatgagggaata |
24414531 |
T |
|
| Q |
103 |
caaaaagaccttaagttatgataaatcaaaaggtaagattttattgtaaaagaagaattactagtgaatttcgattggtaagataagtacctgatagcct |
202 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24414530 |
caaaaagaccttaagttatgataaatcaaaaggtatgattttattgtaaaaaaataattactagtgaatttcgattggtaagagtagtacctgatagcct |
24414431 |
T |
|
| Q |
203 |
ccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcctggtgtagcatctc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414430 |
ccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcctggtgtagcatctc |
24414331 |
T |
|
| Q |
303 |
caaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctcaggtgg |
402 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24414330 |
caaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctggtgg |
24414231 |
T |
|
| Q |
403 |
aggagactctagtgtgtcctgttctca |
429 |
Q |
| |
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| T |
24414230 |
aggagactctagtgtgtcctgttctca |
24414204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 188 - 429
Target Start/End: Original strand, 24419516 - 24419757
Alignment:
| Q |
188 |
agtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419516 |
agtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttc |
24419615 |
T |
|
| Q |
288 |
ctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419616 |
ctggtgtagcatctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgt |
24419715 |
T |
|
| Q |
388 |
ttgattctcaggtggaggagactctagtgtgtcctgttctca |
429 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24419716 |
ttgattctctggtggaggagactctagtgtgtcctgttctca |
24419757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 175 - 422
Target Start/End: Complemental strand, 24379401 - 24379154
Alignment:
| Q |
175 |
gattggtaagataagtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccct |
274 |
Q |
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|
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| ||||||||| |
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| T |
24379401 |
gattggtaagagtagtacctgatatcctccaaccaaatgaatgataatgcaaacattggcaaggtcaataagccagtaaggctcataaaacccaaaccct |
24379302 |
T |
|
| Q |
275 |
gtcaagagatttcctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaag |
374 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| | |||||| | |
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| T |
24379301 |
gtcaagagatttcctggtgtagcatttccaaaagctgcatatccaaagcctccacaacatatgtagaagaatgttgtaatggagattgccatcatggagg |
24379202 |
T |
|
| Q |
375 |
cctttttcattgtttgattctcaggtggaggagactctagtgtgtcct |
422 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
24379201 |
cctttttcatggtttgattctctggtggaggagactctagagtgtcct |
24379154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 188 - 422
Target Start/End: Complemental strand, 24402192 - 24401958
Alignment:
| Q |
188 |
agtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttc |
287 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
24402192 |
agtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttc |
24402093 |
T |
|
| Q |
288 |
ctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgt |
387 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||| |||| |||| ||| ||||||||||| | |
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| T |
24402092 |
ctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatgga |
24401993 |
T |
|
| Q |
388 |
ttgattctcaggtggaggagactctagtgtgtcct |
422 |
Q |
| |
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||||||||| | |||||||||||| || ||||||| |
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| T |
24401992 |
ttgattctccgctggaggagactcgagagtgtcct |
24401958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 24433222 - 24433138
Alignment:
| Q |
267 |
caaaccctgtcaagagatttcctggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgt |
351 |
Q |
| |
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|||||||||| || ||||||||||||||| ||| ||||| |||||||| ||| || |||||||| |||||||| |||||||| |
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| T |
24433222 |
caaaccctgttaaaagatttcctggtgtatcattgccaaaggctgcataaccagcacagccacaacagaggtagaaaaatgttgt |
24433138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 190 - 422
Target Start/End: Complemental strand, 42362601 - 42362369
Alignment:
| Q |
190 |
tacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcct |
289 |
Q |
| |
|
||||||||| ||||| |||||||||| | ||| ||| |||| |||| |||||| |||||||| || ||| |||||||||| ||||||||||| |||||| |
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| T |
42362601 |
tacctgatatcctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcct |
42362502 |
T |
|
| Q |
290 |
ggtgtagcatctccaaaagctgcatatccaaagcaaccacaacataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgttt |
389 |
Q |
| |
|
|| || || |||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| || | |
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| T |
42362501 |
ggagtttgatttccaaaagctgcatatccgaagcatgcacaacataggtagaagaatgttgtaatcaagattgcaatcatggaggcctttttcatggtct |
42362402 |
T |
|
| Q |
390 |
gattctcaggtggaggagactctagtgtgtcct |
422 |
Q |
| |
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|| || | ||||||||||||||| ||||||| |
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| T |
42362401 |
tgttttctgctggaggagactctagagtgtcct |
42362369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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