View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_8 (Length: 413)
Name: NF12033_low_8
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 93 - 399
Target Start/End: Original strand, 4852101 - 4852386
Alignment:
| Q |
93 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacaaatacataaatacaactaaaccatccaaacaatc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
4852101 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacagatacataaagacaactaaaccacccaaacaatc |
4852200 |
T |
|
| Q |
193 |
cttaatacaatagaataacatcagaaaaaccagccccctaaacttcctagtaaccatgaaacaattactttgtagatattgatatgtcaggtcgcgttga |
292 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
4852201 |
cttaatacaatagaataacatcagaaaaaccagccacctaaacttcctagt-accatgaaaca--------------------atgtcaggtcgcgttga |
4852279 |
T |
|
| Q |
293 |
tttttaggctgtagggcaatgcgtgtttcggaacttctcgagtttcttcgagaaagggtagtgctttttgcagaaatcgggtgtatggggtatatgtact |
392 |
Q |
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||||||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4852280 |
tttttaggctggagggcaatgtttgtttcggaagttctcgactttcttcaacaaagggtagtgctttttgcagaaatcgggtatatggggtatatgtact |
4852379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 93 - 399
Target Start/End: Original strand, 4856072 - 4856357
Alignment:
| Q |
93 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacaaatacataaatacaactaaaccatccaaacaatc |
192 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
4856072 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacagatacataaagacaactaaaccacccaaacaatc |
4856171 |
T |
|
| Q |
193 |
cttaatacaatagaataacatcagaaaaaccagccccctaaacttcctagtaaccatgaaacaattactttgtagatattgatatgtcaggtcgcgttga |
292 |
Q |
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| T |
4856172 |
cttaatacaatagaataacatcagaaaaaccagccacctaaacttcctagt-accatgaaaca--------------------atgtcaggtcgcgttga |
4856250 |
T |
|
| Q |
293 |
tttttaggctgtagggcaatgcgtgtttcggaacttctcgagtttcttcgagaaagggtagtgctttttgcagaaatcgggtgtatggggtatatgtact |
392 |
Q |
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||||||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4856251 |
tttttaggctggagggcaatgtttgtttcggaagttctcgactttcttcaacaaagggtagtgctttttgcagaaatcgggtatatggggtatatgtact |
4856350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 93 - 399
Target Start/End: Original strand, 4877807 - 4878092
Alignment:
| Q |
93 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacaaatacataaatacaactaaaccatccaaacaatc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
4877807 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacagatacataaagacaactaaaccacccaaacaatc |
4877906 |
T |
|
| Q |
193 |
cttaatacaatagaataacatcagaaaaaccagccccctaaacttcctagtaaccatgaaacaattactttgtagatattgatatgtcaggtcgcgttga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
4877907 |
cttaatacaatagaataacatcagaaaaaccagccacctaaacttcctagt-accatgaaaca--------------------atgtcaggtcgcgttga |
4877985 |
T |
|
| Q |
293 |
tttttaggctgtagggcaatgcgtgtttcggaacttctcgagtttcttcgagaaagggtagtgctttttgcagaaatcgggtgtatggggtatatgtact |
392 |
Q |
| |
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||||||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4877986 |
tttttaggctggagggcaatgtttgtttcggaagttctcgactttcttcaacaaagggtagtgctttttgcagaaatcgggtatatggggtatatgtact |
4878085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 4834735 - 4834810
Alignment:
| Q |
93 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacaaatacataaa |
168 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |
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| T |
4834735 |
aaattttatttatatgctaacccaacacaagaagtgaagaggctagaggaaagacacaagataacagatacataaa |
4834810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 4826053 - 4826141
Alignment:
| Q |
93 |
aaattttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacaaatacataaatacaactaaacca |
181 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||| | | ||||||||| |||| ||||||| |
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| T |
4826053 |
aaattttatttataagctaacccaacacaagaagtgaagaggctataggaaacatacgagatgaaagatacataaagacaattaaacca |
4826141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 4841458 - 4841529
Alignment:
| Q |
97 |
tttattcataagctaacccaacacaagaagtgaagaggctagaggaaacacacaagacaacaaatacataaa |
168 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||| |
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|
| T |
4841458 |
tttatttatatgctaacccaacacaagaagtgaagaggctagaggaaagacgcaagataagagatacataaa |
4841529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 4845380 - 4845458
Alignment:
| Q |
104 |
ataagctaacccaacacaagaagtgaagaggc--tagaggaaacacacaagacaacaaatacataaatacaactaaacca |
181 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||| ||||| ||||||| ||| |||||||||| |||||||||||| |
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| T |
4845380 |
ataagataacctaacacaagaagtgaagaggctataggggaaagacacaaggtaac-aatacataaagacaactaaacca |
4845458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 4871076 - 4871154
Alignment:
| Q |
104 |
ataagctaacccaacacaagaagtgaagaggc--tagaggaaacacacaagacaacaaatacataaatacaactaaacca |
181 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||| ||||| ||||||| ||| |||||||||| |||||||||||| |
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| T |
4871076 |
ataagataacctaacacaagaagtgaagaggctataggggaaagacacaaggtaac-aatacataaagacaactaaacca |
4871154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 4834850 - 4834897
Alignment:
| Q |
176 |
aaaccatccaaacaatccttaatacaatagaataacatcagaaaaacc |
223 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
4834850 |
aaaccacccaaacaacccttaatacaatagaatcacagcagaaaaacc |
4834897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 4860321 - 4860388
Alignment:
| Q |
115 |
caacacaagaagtgaagaggc--tagaggaaacacacaagacaacaaatacataaatacaactaaacca |
181 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| | ||| |||||||||| |||||||||||| |
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| T |
4860321 |
caacacaagaagtgaagaggctatagaggaaagacacagggtaac-aatacataaagacaactaaacca |
4860388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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