View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_high_12 (Length: 348)
Name: NF12034_high_12
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 377297 - 376975
Alignment:
| Q |
10 |
gcaaaggaagcgttggaggtgtttgcggtgatgttaagggaaggatttgaaccgaatcagataactatgactagcgtgttatctgcttgcaatcattgtg |
109 |
Q |
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| T |
377297 |
gcaaaggaagcgttggaggtgtttgcgatgatgttaagggaaggatttgaaccgaatcagataactatgactagcgtgttatctgcttgcaatcattgtg |
377198 |
T |
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| Q |
110 |
gtttggtagaggaaggaagaatgtgcttcgaagcaatggagagatttggaattgtgcctcagattgagcattatggttgtatgattgatcttttaggaag |
209 |
Q |
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| T |
377197 |
gtttggtagaggaaggaagaaggtgcttcgaagcaatggagagatttggaattgtgcctcagattgagcattatggttgtatgattgatcttttaggaag |
377098 |
T |
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| Q |
210 |
agctggacgcttggatgaggctgaaaaattgattcaggccatgccttatgatcctaacgagataatactgacttcgtttctgtttgcttgttgttacttc |
309 |
Q |
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| T |
377097 |
agctggacgcttggatgaggctgaaaaattgattcaggccatgccttatgatcctaacgaaataatactgacttcgtttctgtttgcttgttgttacttc |
376998 |
T |
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| Q |
310 |
gaagatgtttcaagggctgaaag |
332 |
Q |
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| T |
376997 |
gaagatgtttcaagggctgaaag |
376975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 88 - 332
Target Start/End: Complemental strand, 1090361 - 1090123
Alignment:
| Q |
88 |
ttatctgcttgcaatcattgtggtttggtagaggaaggaagaatgtgcttcgaagcaatggagagatttggaattgtgcctcagattgagcattatggtt |
187 |
Q |
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| T |
1090361 |
ttatctgcttgcaaccattgctgtttggtagaggaagagtgaagatgcttcaaagcaatggagaggtttggaattgtacatcagattgagcattatggtt |
1090262 |
T |
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| Q |
188 |
gtatgattgatcttttaggaagagctggacgcttggatgaggctgaaaaattgattcaggccatgccttatgatcctaacgagataatactgacttcgtt |
287 |
Q |
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| T |
1090261 |
gtatgattgatcttctaggaaggtccgaatgcttggatgaggctgaaaattttattcaagctatgcc-aatg-----agatagataatattgacttcatt |
1090168 |
T |
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| Q |
288 |
tctgtttgcttgttgttacttcgaagatgtttcaagggctgaaag |
332 |
Q |
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| T |
1090167 |
tctattttcttgttgttacttcgaagatgtttcgagggctgaaag |
1090123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 728442 - 728342
Alignment:
| Q |
85 |
gtgttatctgcttgcaatcattgtggtttggtagaggaaggaagaatgtgcttcgaagcaatggagagatttggaattgtgcctcagattgagcattatg |
184 |
Q |
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| T |
728442 |
gtgttatctgcttgcaaccattgttgtttggtagaggaagggtgaagatgctttaaagcaatgtagagattgggaattgtacctcagattaagcattatg |
728343 |
T |
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| Q |
185 |
g |
185 |
Q |
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| T |
728342 |
g |
728342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 27037937 - 27037746
Alignment:
| Q |
14 |
aggaagcgttggaggtgtttgcggtgatgttaagggaaggat---ttgaaccgaatcagataactatgactagcgtgttatctgcttgcaatcattgtgg |
110 |
Q |
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| T |
27037937 |
aggaagcgttggaggtgtttgcggtgattttacaggaataatggtttgaaccaaatgagataactatgactagtgtgttatctgcttgcaaccattgtgg |
27037838 |
T |
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| Q |
111 |
tttggtagaggaaggaagaatgtgcttcgaagcaatggagagatttggaattgtgcctcagattgagcattatggttgtatgattgatctttta |
204 |
Q |
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| T |
27037837 |
tctggtagaagaag--agaagatgcttcaaagctatggagagatttgaaattgtgcctcagattgagcattatggttgtatgattgatctttta |
27037746 |
T |
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