View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_high_18 (Length: 243)
Name: NF12034_high_18
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 15924661 - 15924801
Alignment:
| Q |
1 |
ggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaaatataagcttgaaagagaatggg |
100 |
Q |
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| T |
15924661 |
ggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaaatataagcttgaaagagaatggg |
15924760 |
T |
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| Q |
101 |
gtatacaacattatccaagtctaccattttaattttatgaa |
141 |
Q |
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| T |
15924761 |
gtatacaacattatgcaagtctaacattttaattttatgaa |
15924801 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 13116482 - 13116586
Alignment:
| Q |
4 |
ccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaaatataagcttgaaagagaatggggta |
103 |
Q |
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| T |
13116482 |
ccagaagatactgatggtaataatggaaggatgataacagtttcattgccaggaaaagaacttgaccagctgaaatgtaaactagcaggagaattgggaa |
13116581 |
T |
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| Q |
104 |
tacaa |
108 |
Q |
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| T |
13116582 |
tacaa |
13116586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 46011614 - 46011718
Alignment:
| Q |
4 |
ccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaaatataagcttgaaagagaatggggta |
103 |
Q |
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| T |
46011614 |
ccagaagattacaatggtaataatggaaggatggtaacaatttctttacctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggata |
46011713 |
T |
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| Q |
104 |
tacaa |
108 |
Q |
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||||| |
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| T |
46011714 |
tacaa |
46011718 |
T |
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