View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_high_23 (Length: 209)
Name: NF12034_high_23
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 15924685 - 15924494
Alignment:
| Q |
1 |
tgttaccatcatcatcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccatt |
100 |
Q |
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| T |
15924685 |
tgttaccatcatcatcttctggacctggaaaaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcgccctaataggtttctttccatt |
15924586 |
T |
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| Q |
101 |
aagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatcacctttct |
192 |
Q |
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| T |
15924585 |
aagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacaaaaaaatcatcttttccatcacctttct |
15924494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 46011622 - 46011476
Alignment:
| Q |
14 |
atcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacacca |
113 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||| || ||| ||||||| ||||||| |||||||||| |
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| T |
46011622 |
atcttctggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacacca |
46011523 |
T |
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| Q |
114 |
tataaatcagcttcttccaagtctacaaatgttaactttgctccata |
160 |
Q |
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| T |
46011522 |
taaaaattaccttcttccaaatctacaaatgttaactttgctccata |
46011476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 13116501 - 13116344
Alignment:
| Q |
3 |
ttaccatcatcatcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaa |
102 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||| ||| |||| ||||||| |||||||| |
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| T |
13116501 |
ttaccatcagtatcttctggtcctggaagaaccaaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaa |
13116402 |
T |
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| Q |
103 |
gctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccata |
160 |
Q |
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||||| | || |||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
13116401 |
tctttatctcgtaaaaatcagcctcttccaagtctacaaatgttaacttagctccata |
13116344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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