View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_1 (Length: 807)
Name: NF12034_low_1
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 4004428 - 4005048
Alignment:
| Q |
1 |
tatgatcacgaccgttgcttttgtcatttttcaaaccagactctatttcctcaaaacacgagtaacacgaaaaatcaaagtttgcttataatcccacgtt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4004428 |
tatgatcacgaccgttgcatttgtcatttttcaaaccagactctatttcctcaaaacacgagtaacacgaaaaatcaacgtttgcttataatcccacgtt |
4004527 |
T |
|
| Q |
101 |
tcattcccatcaggtttgtacgtgacttttgtttggtatttaccaacaagtagcttttgtaatttaagattgtcttgaacatgtaattttaattgacatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4004528 |
tcattcccattaggtttgtacgtgacttttgtttggtatttaccaacaagtagcttttgtaatttaagattgtcttgaacatgtaattttaattgacatt |
4004627 |
T |
|
| Q |
201 |
gtatataaactgtgatgtttgatatttgaccattagtgcatttcatatttatttcaatatttgaagtctctccttnnnnnnnnnnnnntcaattcaattc |
300 |
Q |
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| T |
4004628 |
gtatataaactgtgatgtttgatatttgaccattagtgcatttcatatttatttcaatatttgaagtctctccttaaaaaaccaaaaatcaattcaattc |
4004727 |
T |
|
| Q |
301 |
agtggatcatatgatttgtttctaatggatggatggttacaaaataaaactgaaggaaatcatatcatattattttaactgaaggaaaccacgtttcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4004728 |
agtggatcatatgatttgtttctaatggatgg----tcacaaaataaaactgaaggaaatcatatcatattattttaactgaaggaaactacgtttcatt |
4004823 |
T |
|
| Q |
401 |
tgaagtctttaccactaccattgtcaccaaacactctccaccaccacagcactattgctcctcttcactatctacttctattgtattctaatttctatgt |
500 |
Q |
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| T |
4004824 |
tgaagtctttaccactaccattgtcaccaaacactctccaccaccacagcactattgctcctcttcactatctacttctattgcattctcatttctatgt |
4004923 |
T |
|
| Q |
501 |
atgtttgccatgatttggttgaaacatcaaagtgtaatttttgcaaaattatgatagctcgttgtacttccatagatccaaacatgcacttggacactct |
600 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
4004924 |
atgtttgccatgatttggttgaaacttcaaagtgtaatttttgcaaaattatgatagctccttgtgcttccatagatccaaacatgcacttggacactct |
4005023 |
T |
|
| Q |
601 |
accattgtcaccaaacaccctccac |
625 |
Q |
| |
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| T |
4005024 |
accattgtcaccaaacaccctccac |
4005048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 658 - 791
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
658 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt--nnnnnnnn |
754 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
|
| Q |
755 |
nctgcattcaaacatgacctgctcgaattcctacaca |
791 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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