View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12034_low_11 (Length: 364)
Name: NF12034_low_11
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 42188271 - 42188611
Alignment:
| Q |
19 |
acaatgccgtttgctccaattcaaccatagtcaaggtaaatgcgcaaagaaaattccttaattaatttgggtttacatgtaaaatttttaattaagatac |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
42188271 |
acaatgccgtttgttccaattcaaccatagtcaaggtaaatgcgcaaagaaaattccttaattaatttgggtttacatgtaaaaaatgtaattaagatac |
42188370 |
T |
|
| Q |
119 |
taatctttctgttttgatttaatttcacagtttgatagtgccagaaagcatggaattcttttggaagctgtacaaattctcagtgatttaaaccttttta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42188371 |
taatctttctgttttgatttaatttcacagtttgatagtgccagaaagcatggaattcttttggaagctgtacaaattctcagtgatttaaaccttttta |
42188470 |
T |
|
| Q |
219 |
ttaagaaagcatatgtttcatctgatggaagatggttcatggatggtaagctaatttttcaatctcgttctttgttgtgataattttgattctgttttcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42188471 |
ttaagaaagcatatgtttcatctgatggaagatggttcatggatggtaagctaatttttcaatctcattctttgttgtgataattttgattctgttttcc |
42188570 |
T |
|
| Q |
319 |
ctaannnnnnngttgttcaatgttcagtttttcatctcact |
359 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| |
|
|
| T |
42188571 |
ctaatttttttgttgttcaatgttcagtttttcatgtcact |
42188611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University