View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_12 (Length: 352)
Name: NF12034_low_12
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 49268024 - 49268360
Alignment:
| Q |
10 |
gcatatcaaacagtttggaatgtcatgtgcacttgaaactcaatgcggacaagcttatggcgcaaagcaatataaaaaatttggtgttcaaatttacact |
109 |
Q |
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| T |
49268024 |
gcatatcaaacagtttggaatgtcatgtgcacttgaaactcaatgcggacaagcttatggtgcaaagcaatataaaaaatttggtgttcaaatttacact |
49268123 |
T |
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| Q |
110 |
gctgtcttttctcttattatagcttgtcttcctctatctctattatggatcttcttgggaaggctattgattttactcggtcaagaccctctgatttcac |
209 |
Q |
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| T |
49268124 |
gctgtcttttctcttattatagcttgtcttcctctatctctattatggatcttcttgggaaggctattgattttactcggtcaagaccctctgatttcac |
49268223 |
T |
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| Q |
210 |
aagaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatact |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49268224 |
aagaagctggaaaattttccatgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatact |
49268323 |
T |
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| Q |
310 |
tcctcttgttataagttccactgttaccctatgcttc |
346 |
Q |
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| T |
49268324 |
tcctcttgttataagttccactgttaccctgtgcttc |
49268360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 49255301 - 49255629
Alignment:
| Q |
11 |
catatcaaacagtttggaatgtcatgtgcacttgaaactcaatgcggacaagcttatggcgcaaagcaatataaaaaatttggtgttcaaatttacactg |
110 |
Q |
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| T |
49255301 |
catatcaaacagtttggaatgtcatgtgcacttgaaacgcaatgcggacaagcttatggtgcaaagcaatatagaaagtttggtgttcaagtttacactg |
49255400 |
T |
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| Q |
111 |
ctgtcttttctcttattatagcttgtcttcctctatctctattatggatcttcttgggaaggctattgattttactcggtcaagaccctctgatttcaca |
210 |
Q |
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|| || |||||||||||||||||||| ||||||| ||| |||| ||| || |||||| | | || ||| |||||| || ||||||||| |||||||||| |
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| T |
49255401 |
ctatcatttctcttattatagcttgtgttcctctctctttattgtggctcaacttggggaagttactgagtttacttggccaagaccctttgatttcaca |
49255500 |
T |
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| Q |
211 |
agaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatactt |
310 |
Q |
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| T |
49255501 |
agaagctggaaaatttgctatgtgcatgattcctgctctttttgcttatgcaactcttcaggcactggtcagatactttcttatgcaaagtttggttctt |
49255600 |
T |
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| Q |
311 |
cctcttgttataagttccactgttaccct |
339 |
Q |
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| T |
49255601 |
cctcttgttataagttcctctgttaccct |
49255629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 163 - 339
Target Start/End: Complemental strand, 49274180 - 49274004
Alignment:
| Q |
163 |
cttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgca |
262 |
Q |
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|||||| | ||||| || ||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
49274180 |
cttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgca |
49274081 |
T |
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| Q |
263 |
acgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccct |
339 |
Q |
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|| |||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| |
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| T |
49274080 |
acacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccct |
49274004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 49273272 - 49273360
Alignment:
| Q |
234 |
gcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttata |
322 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
49273272 |
gcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgttata |
49273360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 29356746 - 29356883
Alignment:
| Q |
209 |
caagaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatac |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || | || |||||| ||||||||||||||||||||||||| |
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| T |
29356746 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatag |
29356845 |
T |
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| Q |
309 |
ttcctcttgttataagttccactgttaccctatgcttc |
346 |
Q |
| |
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||| ||||||||||| |||||||||||| || |||||| |
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| T |
29356846 |
ttcatcttgttataacttccactgttacactttgcttc |
29356883 |
T |
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