View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12034_low_16 (Length: 290)
Name: NF12034_low_16
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 12934607 - 12934883
Alignment:
| Q |
1 |
cctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgcgttgccttatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
12934607 |
cctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaaca |
12934706 |
T |
|
| Q |
101 |
acagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattgcgaatgaagcaggaaagatacgtta |
200 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
12934707 |
actgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgtta |
12934806 |
T |
|
| Q |
201 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatgtc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12934807 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatgtc |
12934883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 17123569 - 17123650
Alignment:
| Q |
196 |
cgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatgtc |
277 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17123569 |
cgttatccattgcgataatcaaagcgttttggattcgagtaagaatgcgatgtaccactcttgtacaaagtatattgatgtc |
17123650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 14177877 - 14178153
Alignment:
| Q |
1 |
cctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgcgttgccttatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
14177877 |
cctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaaca |
14177976 |
T |
|
| Q |
101 |
acagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattgcgaatgaagcaggaaagatacgtta |
200 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
14177977 |
accgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgtta |
14178076 |
T |
|
| Q |
201 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatgtc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14178077 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatgtc |
14178153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 28607996 - 28607720
Alignment:
| Q |
1 |
cctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgcgttgccttatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
28607996 |
cctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaaca |
28607897 |
T |
|
| Q |
101 |
acagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattgcgaatgaagcaggaaagatacgtta |
200 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28607896 |
accgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgtta |
28607797 |
T |
|
| Q |
201 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatgtc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28607796 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatgtc |
28607720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 15300393 - 15300669
Alignment:
| Q |
1 |
cctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaatgcgttgccttatcaaca |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
15300393 |
cctggatggtagaaagtctgcttcaggaattgtgtttgcttttgcagggtgagctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaaca |
15300492 |
T |
|
| Q |
101 |
acagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattgcgaatgaagcaggaaagatacgtta |
200 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||||||| |||||| |||| ||||||||| ||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
15300493 |
actgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagaattcatgatcaattgggaatgaagcaggaaaggtacgtta |
15300592 |
T |
|
| Q |
201 |
tccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatgtc |
277 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15300593 |
tccattgtgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatgtc |
15300669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University