View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_17 (Length: 275)
Name: NF12034_low_17
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 16829085 - 16829331
Alignment:
| Q |
14 |
agagtgtagaaagtgtttgtgagtatattccatttggatctataaaagtctcttttgaacaacctttgtagaccaatgtagtgtaatctgaagaagattc |
113 |
Q |
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| T |
16829085 |
agagtgtagaaagtgtttgtgagtatattccatttggatctataaaagtctcttttgaacaacctttgtagaccaatgtagtgtaatctgaagaagattc |
16829184 |
T |
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| Q |
114 |
tgcaaaatgaggtgggttaagattagtaaataaagctagaataaatgaaagaaatatgggttttaaggtgaaactcattttgctttttgtgtagtgttaa |
213 |
Q |
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| T |
16829185 |
tgcaaaatgaggtgggttaagattagtaaataaagctagaataaatgaaagaaatatggtttttaaggtgaaactcattttgctttttgtgtagtgttaa |
16829284 |
T |
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| Q |
214 |
gggatcaaatcattgcaaatttgaggaaaatctttgaagttgttttt |
260 |
Q |
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| T |
16829285 |
gggatcaaatcattgcaaatttgaggaaaatctttgaagttgttttt |
16829331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 32532918 - 32533007
Alignment:
| Q |
22 |
gaaagtgtttgtgagtatattccatttggatctataaaagtctcttttgaacaacctttgtagaccaatgtagtgtaatctgaagaagat |
111 |
Q |
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| T |
32532918 |
gaaagtgattgtgaatatgcaccatttggatctgtgaatgtttcttttgaacaacccttgtagaccaaagttgtgtaatcaggagaagat |
32533007 |
T |
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