View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12034_low_18 (Length: 260)
Name: NF12034_low_18
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31949900 - 31949658
Alignment:
| Q |
1 |
ataatcaacagtgctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949900 |
ataatcaacactgctaattctttcagaaaagctgctcaaatcgataagacggaccattttcaccaatgcctatagatggaggcaattttgtcttcaacac |
31949801 |
T |
|
| Q |
101 |
caacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttg--c |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31949800 |
caacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatctttattcctgccatcaacttacgggcgttgcac |
31949701 |
T |
|
| Q |
199 |
acagaggtggccgctcaccagaaaatacacaagacaaatcttg |
241 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31949700 |
acagaggtggccactcaccagaaaatacacaagacaaatcttg |
31949658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 29707501 - 29707581
Alignment:
| Q |
38 |
aaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggtgcaca |
118 |
Q |
| |
|
|||| ||||||| ||||||||| | ||| ||| | ||||||||||| |||||| ||| ||||||||||||||| ||||| |
|
|
| T |
29707501 |
aaattgataagatggaccatttcctccagtgcttgcagatggaggcatttttgttctcagcaccaacattggaggcgcaca |
29707581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 27510027 - 27510248
Alignment:
| Q |
14 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
113 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
27510027 |
ctaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
27510126 |
T |
|
| Q |
114 |
gcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttgcacagaggtggccgct |
213 |
Q |
| |
|
||||| ||||| |||||| ||||| || |||||||||||| ||| | |||||||||| |||| | ||||||||||| ||| |||||| | | ||| | |
|
|
| T |
27510127 |
gcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccatt |
27510226 |
T |
|
| Q |
214 |
caccagaaaatacacaagacaa |
235 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
27510227 |
caccagaaaaaacacatgacaa |
27510248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 27271379 - 27271184
Alignment:
| Q |
14 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
113 |
Q |
| |
|
||||||||| |||||| |||| |||| ||||||| ||||||||| | ||| ||| | |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
27271379 |
ctaattcttccagaaatagtgcttaaattgataagatggaccatttcctccagtgcttgctgatggaggcatttttgttctcaacaccaacattggaggc |
27271280 |
T |
|
| Q |
114 |
gcacatagatacacaacctt--------attgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttgcaca |
201 |
Q |
| |
|
||||| |||| |||||| | |||| || |||||||||||| ||| | |||||| ||| |||| | ||||||||||| |||||||||| |
|
|
| T |
27271279 |
gcacaatgatagacaaccctatgtccccattgttagctgctcccgtgacacctaatttgatatttgctccttcaatcaacttacgcgcgttgcaca |
27271184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 39210906 - 39210685
Alignment:
| Q |
14 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
113 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
39210906 |
ctaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
39210807 |
T |
|
| Q |
114 |
gcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttgcacagaggtggccgct |
213 |
Q |
| |
|
||||| ||||| |||||| ||||| || ||||||| |||| ||| | |||||||||| |||| | ||||||||| | ||| |||||| | | ||| | |
|
|
| T |
39210806 |
gcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctccttcaatcaacttatgcgcgctgcacaatgcttgccatt |
39210707 |
T |
|
| Q |
214 |
caccagaaaatacacaagacaa |
235 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
39210706 |
caccagaaaaaacacatgacaa |
39210685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University