View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_2 (Length: 717)
Name: NF12034_low_2
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 15 - 631
Target Start/End: Original strand, 15180300 - 15180938
Alignment:
| Q |
15 |
agaaggaattaaagttcaaagttgccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagataattt |
114 |
Q |
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| T |
15180300 |
agaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaattt |
15180399 |
T |
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| Q |
115 |
-cgggaactgcaattgatcttgctagcaatgacaatgctatcaccgat---------------------attggaattgttgttaggggacaagctaaca |
192 |
Q |
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| T |
15180400 |
tctggaactgcaattgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaaca |
15180499 |
T |
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| Q |
193 |
taatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattg |
292 |
Q |
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| T |
15180500 |
taatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattg |
15180599 |
T |
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| Q |
293 |
ttacatggattataattctatagtcatggaagatcctgttcaagttcatgttactaatggttttttcttaggggatgctaatattgttttgaagtcaatt |
392 |
Q |
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| T |
15180600 |
ttacatggattataatagtatagtcatggaagatcctgttcaagttcatgtcactgatggttttttcttaggagatgctaatattgttttgaagtcaatt |
15180699 |
T |
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| Q |
393 |
aaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaaca |
492 |
Q |
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| T |
15180700 |
aaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaaca |
15180799 |
T |
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| Q |
493 |
ttgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaaccgttgggaagttgaatgtggatggtaatggcacaaaatgggtggg |
592 |
Q |
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| T |
15180800 |
ttgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaacggttgggaagttaagtgtggatggtaatggcacaaaatgggtggg |
15180899 |
T |
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| Q |
593 |
tgatttttcaaatgttttggtatttcctaataggattag |
631 |
Q |
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| T |
15180900 |
tgatttttcaaatgttttggtgtttcctaataggattag |
15180938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 627 - 702
Target Start/End: Original strand, 15180963 - 15181038
Alignment:
| Q |
627 |
attagagggaccaaagtttgttgcacattcagtgagtaatgtgtcaaataatgttgtagttgttgaaagtgagaaa |
702 |
Q |
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| T |
15180963 |
attagaaggaccaaagtttgttgcacattcagtgagtaatgtgtcaaataatgttgtagttgttgaaagtgagaaa |
15181038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 199 - 631
Target Start/End: Complemental strand, 38859387 - 38858955
Alignment:
| Q |
199 |
caggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattgttacat |
298 |
Q |
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| T |
38859387 |
caggggtgcattgttataacaaagcagcaggatttggaggtataggtatcttagtgaaattggcaggaaattctttaactagaattgacaactgttatat |
38859288 |
T |
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| Q |
299 |
ggattataattctatagtcatggaagatcctgttcaagttcatgttactaatggttt-tttcttaggggatgctaatattgttttgaagtcaattaaagg |
397 |
Q |
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| T |
38859287 |
ggattatactggtatagtaacggaagaccctgttcaagttcatgtcactaattgtctatttctt-ggggatgctaatattttaataaaggctgctgaagg |
38859189 |
T |
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| Q |
398 |
gaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaacattgat |
497 |
Q |
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| T |
38859188 |
tcaaattttgggtttgaacatagtggataatatgttcaatggtgatcctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgat |
38859089 |
T |
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| Q |
498 |
caagtggtgattgataggaacaatgtgattggtatgattttaagatcaaccgttgggaagttgaatgtggatggtaatggcacaaaatgggtgggtgatt |
597 |
Q |
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| T |
38859088 |
caagtggtgattgatagaaacaatgtgaatggtatgggcttgagatcaacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatt |
38858989 |
T |
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| Q |
598 |
tttcaaatgttttggtatttcctaataggattag |
631 |
Q |
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| T |
38858988 |
tttcatcagttttggtatttcctaatcggattag |
38858955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 38859568 - 38859516
Alignment:
| Q |
40 |
catgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcgg |
92 |
Q |
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| T |
38859568 |
catgagacattcatatcaagttgttttcttggacaacactcaacagttggcgg |
38859516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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