View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_27 (Length: 202)
Name: NF12034_low_27
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 14580293 - 14580460
Alignment:
| Q |
19 |
gaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaa |
118 |
Q |
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| T |
14580293 |
gaacgccagaaaccaatcaagaatttcatagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaa |
14580392 |
T |
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| Q |
119 |
agattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaaga |
186 |
Q |
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| T |
14580393 |
agattagcatgttttttctaccaatagatgaatcagctaatgctgcaagaaaaaaagaaccaagaaga |
14580460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 14543294 - 14543127
Alignment:
| Q |
19 |
gaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaa |
118 |
Q |
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| T |
14543294 |
gaacgccagaaaccaatcaagaatttcattgctgagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaa |
14543195 |
T |
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| Q |
119 |
agattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaaga |
186 |
Q |
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| T |
14543194 |
agattagcatgttttttctgccaatagatgaatcagctaatgctgcaagaaaaaaagaaccaagaaga |
14543127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 35622425 - 35622589
Alignment:
| Q |
22 |
cgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaaga |
121 |
Q |
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| T |
35622425 |
cgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacattggtggataagattataagcatggaagttattgacattgagacacaagaaaata |
35622524 |
T |
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| Q |
122 |
ttagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaaga |
186 |
Q |
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|||| | ||||| | ||| | |||||| ||||||||||||||||| || |||||||||||||| |
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| T |
35622525 |
ttaggacttttttccgaccgaaagacgagtcagctaatgctgcaagaaaggaagaaccaagaaga |
35622589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 34263501 - 34263652
Alignment:
| Q |
16 |
gatgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaag |
115 |
Q |
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| T |
34263501 |
gatgaacgccagaaaccgatcaagaatttcaaggcagagtaaatccaaacattagtggaaaagattatcagaatggaagttattgacatcagaacacaag |
34263600 |
T |
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| Q |
116 |
aaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaag |
167 |
Q |
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| T |
34263601 |
aaaagaataacatgttttttcgaccaaaagatgaatcagctaatgctgcaag |
34263652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 10404301 - 10404178
Alignment:
| Q |
19 |
gaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaa |
118 |
Q |
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||||||||||| || || | |||||| ||||| |||||||||||||||||||||||||| | |||| || || ||||||||||| || | |||||| | |
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| T |
10404301 |
gaacgccaaaatccgataaggaatttgaaagccgagtaaatccaaacattggttgaaaacacaatgatgattgaggttattgacatcgataaacaagaga |
10404202 |
T |
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| Q |
119 |
agattagcatgttttttctaccaa |
142 |
Q |
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|| | |||||||||||| |||| |
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| T |
10404201 |
taatcaacatgttttttcttccaa |
10404178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 10378312 - 10378189
Alignment:
| Q |
19 |
gaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaa |
118 |
Q |
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|||||| |||| |||||||||||||| ||| | || ||||||||||||||||| || || | ||||| || |||| ||| |||||||| | |||||| | |
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| T |
10378312 |
gaacgcaaaaacccaatcaagaatttaaaaacagaataaatccaaacattggtagagaaaacaatgagaatagaagctatagacattgataaacaagaca |
10378213 |
T |
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| Q |
119 |
agattagcatgttttttctaccaa |
142 |
Q |
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| T |
10378212 |
taacaagcatgttctttctaccaa |
10378189 |
T |
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