View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12034_low_5 (Length: 556)

Name: NF12034_low_5
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12034_low_5
NF12034_low_5
[»] chr1 (8 HSPs)
chr1 (14-541)||(41891845-41892371)
chr1 (161-298)||(1284831-1284965)
chr1 (58-274)||(33072763-33072978)
chr1 (62-183)||(5924783-5924902)
chr1 (190-301)||(10653488-10653595)
chr1 (58-139)||(3284660-3284741)
chr1 (58-138)||(9312188-9312268)
chr1 (58-139)||(9310570-9310651)
[»] chr7 (14 HSPs)
chr7 (63-310)||(29597970-29598216)
chr7 (189-310)||(21633311-21633432)
chr7 (170-310)||(21631334-21631463)
chr7 (63-289)||(25471769-25471994)
chr7 (207-310)||(21631138-21631233)
chr7 (207-310)||(21633099-21633194)
chr7 (63-185)||(28014271-28014392)
chr7 (58-139)||(37405442-37405523)
chr7 (98-310)||(9878162-9878380)
chr7 (207-256)||(29856103-29856152)
chr7 (63-138)||(4895742-4895817)
chr7 (63-138)||(28124585-28124660)
chr7 (63-138)||(28126412-28126487)
chr7 (365-397)||(47628063-47628095)
[»] chr6 (11 HSPs)
chr6 (62-304)||(30488430-30488669)
chr6 (58-138)||(24544777-24544857)
chr6 (189-310)||(25050851-25050974)
chr6 (99-202)||(5376974-5377075)
chr6 (99-202)||(5378829-5378930)
chr6 (222-304)||(26857814-26857895)
chr6 (58-139)||(15866738-15866819)
chr6 (58-139)||(15868550-15868631)
chr6 (58-139)||(33866257-33866338)
chr6 (365-397)||(716305-716337)
chr6 (99-202)||(1088687-1088788)
[»] chr3 (8 HSPs)
chr3 (63-304)||(25836365-25836605)
chr3 (192-304)||(26667113-26667225)
chr3 (58-310)||(9032697-9032948)
chr3 (161-304)||(548090-548229)
chr3 (207-268)||(43819951-43820012)
chr3 (99-202)||(17402816-17402917)
chr3 (192-255)||(31135393-31135456)
chr3 (63-138)||(20302786-20302861)
[»] scaffold0060 (1 HSPs)
scaffold0060 (65-310)||(8957-9201)
[»] chr5 (8 HSPs)
chr5 (63-310)||(21637131-21637377)
chr5 (187-310)||(4897419-4897540)
chr5 (119-310)||(33689854-33690044)
chr5 (191-303)||(6742424-6742539)
chr5 (159-302)||(33688153-33688296)
chr5 (69-159)||(20012927-20013017)
chr5 (265-310)||(3161542-3161587)
chr5 (58-139)||(39787051-39787132)
[»] chr4 (13 HSPs)
chr4 (57-310)||(42664921-42665172)
chr4 (187-310)||(10032675-10032797)
chr4 (170-266)||(5653277-5653372)
chr4 (63-252)||(56074644-56074832)
chr4 (69-181)||(52545107-52545217)
chr4 (230-310)||(42665175-42665255)
chr4 (60-138)||(18395638-18395716)
chr4 (189-309)||(18812660-18812781)
chr4 (58-137)||(51295323-51295402)
chr4 (58-139)||(5653165-5653246)
chr4 (191-260)||(8678568-8678637)
chr4 (439-483)||(43081812-43081856)
chr4 (58-90)||(54296617-54296649)
[»] chr2 (7 HSPs)
chr2 (170-310)||(20957429-20957568)
chr2 (170-299)||(20957612-20957740)
chr2 (166-310)||(17149031-17149174)
chr2 (191-302)||(14007624-14007739)
chr2 (63-238)||(18612038-18612212)
chr2 (62-138)||(17148626-17148701)
chr2 (438-483)||(8951382-8951427)
[»] scaffold0245 (2 HSPs)
scaffold0245 (161-298)||(9476-9610)
scaffold0245 (161-298)||(11098-11232)
[»] scaffold0229 (1 HSPs)
scaffold0229 (161-298)||(9804-9938)
[»] scaffold0057 (1 HSPs)
scaffold0057 (58-202)||(58882-59023)
[»] chr8 (9 HSPs)
chr8 (207-300)||(35674965-35675058)
chr8 (58-180)||(19473649-19473769)
chr8 (58-180)||(19544574-19544694)
chr8 (58-180)||(19588002-19588122)
chr8 (58-183)||(14939629-14939752)
chr8 (76-201)||(3379126-3379248)
chr8 (69-181)||(31032008-31032118)
chr8 (207-304)||(29456289-29456386)
chr8 (438-482)||(26516874-26516918)
[»] scaffold0160 (1 HSPs)
scaffold0160 (219-310)||(28401-28492)
[»] scaffold0006 (1 HSPs)
scaffold0006 (81-183)||(39258-39359)
[»] scaffold0586 (1 HSPs)
scaffold0586 (166-285)||(5486-5605)
[»] scaffold0079 (1 HSPs)
scaffold0079 (58-129)||(15725-15796)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Complemental strand, 41892371 - 41891845
Alignment:
Q  14 agaaaagtatttgtcatcttacaagtcgggtttgtaaggattaattagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaac 113  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41892371 agaaaagtatttgtcatcttataagtcggctttgtaaggattaattagtaatcatggaatcctaaggataaagatcataatgtttagcaaaaaagcaaac 41892272  T
Q  114 ataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgataaaagatgaatgagagagtacaatagtgataattattta 213  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41892271 ataatagtattcatgtggaagatacccatataaactagtcatagaaatgaattagattgataaaagatgaatgagagagtacaatagtgataattattta 41892172  T
Q  214 taggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactataatctaacgg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  41892171 taggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatacttcacctatcaactaact-tggtttattcactaaaatctaacgg 41892073  T
Q  314 ttaggcccaatttcaatgatttacttaagagatactttgatggaaggccaaaaattgattgacattctttaatttaagggactagttttgttcnnnnnnn 413  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  41892072 ttaggcccaatttcaatgatttactaaagagatactttgatggaaggccaaaaattgattgacattctttaatttaagggactagttttgttcaaaaaaa 41891973  T
Q  414 cattaagggacgagtttgctatgcctatttcataaatttggaggactaaattgactgacccttacaattttgtagagcaaaacgatcatttactcctgtt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41891972 cattaagggacgagtttgctatgcctatttcataaatttggaggactaaattgactgacccttacaattttgtagagcaaaacgatcatttactcctgtt 41891873  T
Q  514 ttggtagttttgcaaagagtgtgatttt 541  Q
    ||||||||||||||||||||||||||||    
T  41891872 ttggtagttttgcaaagagtgtgatttt 41891845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 1284965 - 1284831
Alignment:
Q  161 tgaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaac 260  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||  |||||||||||||||||||    
T  1284965 tgaattagattga-aaaagataact-agagagtacaatagtgatagttatttataggg-tgagttagtctaactaactcttaactacctaaccaaccaac 1284869  T
Q  261 taatcatactttacctatcaactaactatggtttattc 298  Q
    ||| |||| ||||| | |||||||||||||||||||||    
T  1284868 taaccatagtttacatctcaactaactatggtttattc 1284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 274
Target Start/End: Complemental strand, 33072978 - 33072763
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    ||||| |||||||||||  | |||||||| |||||||| | ||||||||||  | ||||| ||||||||||||||||||| | | | | ||| ||  ||     
T  33072978 ttagtcatcatggaatctcagggataaaggtcataatgatcagcaagaaagagatcataagagtattcatgtgggagatatccacaaagactcgtagtat 33072879  T
Q  158 aaatgaattagatt-gataaaaga-tgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaa 255  Q
    || ||||| ||||| ||||||| | ||||| ||||||||||||||||| | ||||||||| |||||||| ||  ||||||||||  ||||||||||||||    
T  33072878 aa-tgaat-agatttgataaaaaaatgaataagagagtacaatagtgagagttatttataagggtgagtcag-ctaactaactcttaactacctaaccaa 33072782  T
Q  256 ccaactaatcatactttac 274  Q
    |||||||| |||| |||||    
T  33072781 ccaactaaccatagtttac 33072763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 5924783 - 5924902
Alignment:
Q  62 taatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaat 161  Q
    |||||||| ||||| | |||||||||||||| || | || || ||||||| ||||| ||||||||| | ||||||||  ||| |||||  |||||| |||    
T  5924783 taatcatgaaatccgatggataaagatcatagtgatcagtaaaaaagcaagcataagagtattcatataggagatactcatagaaactcattatag-aat 5924881  T
Q  162 gaattagattgataaaagatga 183  Q
    ||| ||||||||||||||||||    
T  5924882 gaa-tagattgataaaagatga 5924902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 10653595 - 10653488
Alignment:
Q  190 gagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactat 289  Q
    ||||||||| |||| |  |||||| |||||||||||||| ||||||||||  ||| |||||||    ||||||| |||| ||||| ||| ||||||||||    
T  10653595 gagtacaattgtgagagctatttacaggggtgagttagtctaactaactcttaaccacctaac----caactaaccataatttacgtataaactaactat 10653500  T
Q  290 ggtttattcact 301  Q
      ||||||||||    
T  10653499 actttattcact 10653488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 3284741 - 3284660
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||| |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  3284741 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacc 3284660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 9312268 - 9312188
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||| ||||||| |||||||||||||||| || | ||| ||||||  | ||||   |||||||||||||||||||    
T  9312268 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatac 9312188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 9310651 - 9310570
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||  |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  9310651 ttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacc 9310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 63 - 310
Target Start/End: Original strand, 29597970 - 29598216
Alignment:
Q  63 aatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatg 162  Q
    ||||||||||||| | |||||||| ||||| || | ||||||||||  | ||||| ||||||||||||||||||||| ||| | |||  |  ||| ||||    
T  29597970 aatcatggaatcccagggataaaggtcatagtgatcagcaagaaagagagcataagagtattcatgtgggagatacccatagagactcatagtag-aatg 29598068  T
Q  163 aattaga-ttgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaact 261  Q
    || |||| |||||||||||||||| | |||||| ||| |||| | |||||||||||||||||||||| ||||||||||| ||| |||||||| || ||||    
T  29598069 aactagatttgataaaagatgaat-aaagagtataatggtgagagttatttataggggtgagttagtctaactaactcctaaccacctaacctacaaact 29598167  T
Q  262 aatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    || |||| ||||| ||| ||||||||||||||||||||||||| |||||    
T  29598168 aaccatagtttacatattaactaactatggtttattcactatactctaa 29598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 21633311 - 21633432
Alignment:
Q  189 agagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaacta 288  Q
    |||||||||| |||||| |||||||||| ||||| ||||||||||||||||| ||| |||||||| ||||||||| |||| ||||| ||||||||||| |    
T  21633311 agagtacaatggtgatagttatttatagtggtgaattagtataactaactcctaaccacctaacctaccaactaaccatagtttacatatcaactaacaa 21633410  T
Q  289 tggtttattcactataatctaa 310  Q
    ||||||| |||||||| |||||    
T  21633411 tggtttactcactatactctaa 21633432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 21631334 - 21631463
Alignment:
Q  170 ttgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatac 269  Q
    ||||||||||||||||   |||||||||| ||||   |||||||||||||||||||||| |||||||||        ||||||| ||||||||| ||||     
T  21631334 ttgataaaagatgaat---agagtacaatggtgagggttatttataggggtgagttagtctaactaact--------cctaacctaccaactaaccatag 21631422  T
Q  270 tttacctatcaactaactatggtttattcactataatctaa 310  Q
    ||||| ||||||||||| |||||||| |||||||| |||||    
T  21631423 tttacatatcaactaacaatggtttactcactatactctaa 21631463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 63 - 289
Target Start/End: Original strand, 25471769 - 25471994
Alignment:
Q  63 aatcatggaatcctaaggataaagatcata-atgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaat 161  Q
    |||||||||||| |||||| |||||||||| ||| | || |||| ||||| ||||| | |||||| |||||||||||  ||| |||||  ||||| ||||    
T  25471769 aatcatggaatcataaggagaaagatcatagatg-taagaaagatagcaagcataagattattcacgtgggagatactaatagaaactcattatataaat 25471867  T
Q  162 gaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactccc-aactacctaaccaaccaac 260  Q
    ||| |||||||||||||||||||| |  ||||||||||| |  |  |||||||||| |||| || |  |||||||||||| ||||||  |||||||| ||    
T  25471868 gaa-tagattgataaaagatgaat-aatgagtacaatagagtgaggtatttataggagtgacttggagtaactaactccctaactactgaaccaacctac 25471965  T
Q  261 taatcatactttacctatcaactaactat 289  Q
    |||   || || |||||||||||||||||    
T  25471966 taactctagttaacctatcaactaactat 25471994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 21631138 - 21631233
Alignment:
Q  207 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactataat 306  Q
    |||||||||||||||||||||| |||||||||||        ||||| ||||||||| |||| ||||| |||||||||||||||||||| |||||||| |    
T  21631138 ttatttataggggtgagttagtctaactaactcc--------taacctaccaactaaccatagtttacatatcaactaactatggtttactcactatact 21631229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 21633099 - 21633194
Alignment:
Q  207 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactataat 306  Q
    ||||||||||||||||| |||| |||||||||||        ||||| ||||||||| |||| ||||| |||||||||||||||||||| ||| |||| |    
T  21633099 ttatttataggggtgagatagtctaactaactcc--------taacctaccaactaaccatagtttacatatcaactaactatggtttactcattatact 21633190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 28014271 - 28014392
Alignment:
Q  63 aatcatggaatcctaaggataaagatcata-atgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaat 161  Q
    ||||||| |||| || ||| |||||||||| ||||  ||||||| ||||| ||||| |||  |||||||||||||||  ||| |||||  || |||||||    
T  28014271 aatcatgaaatcatagggagaaagatcatagatgta-agcaagatagcaagcataagagtgctcatgtgggagatactcatagaaactcattgtagaaat 28014369  T
Q  162 gaattagattgataaaagatgaat 185  Q
    ||| ||||||||||||||||||||    
T  28014370 gaa-tagattgataaaagatgaat 28014392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 37405442 - 37405523
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||| |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  37405442 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacc 37405523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 310
Target Start/End: Original strand, 9878162 - 9878380
Alignment:
Q  98 tagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgataaaagatgaatgagagagtacaa 197  Q
    |||||||||||  | ||||||||||||||||||||||||| | ||| | |||  |  | ||| ||||| ||||| ||||||||| | | |||||||||||    
T  9878162 tagcaagaaagagagcataatagtattcatgtgggagatatctatagagactcatagttgaa-tgaat-agattaataaaagattagtaagagagtacaa 9878259  T
Q  198 tagtgataattatttatag-gggtgagttagtataact--------aactcccaactacctaaccaaccaactaatcatactttacctatcaactaacta 288  Q
    | |||| | |||||||||| |||| ||||||| |||||        |||||| ||||| |||||  || |||||| |||| ||||  ||| ||||| |||    
T  9878260 tggtgagagttatttatagtgggttagttagtctaactgtctaactaactcctaactatctaacatac-aactaaccatagtttatatattaactaccta 9878358  T
Q  289 tggtttattcactataatctaa 310  Q
    |||||||||||||||| |||||    
T  9878359 tggtttattcactatactctaa 9878380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 29856103 - 29856152
Alignment:
Q  207 ttatttataggggtgagttagtataactaactcccaactacctaaccaac 256  Q
    ||||||||||  ||||||| || ||||||||||| |||||||||||||||    
T  29856103 ttatttatagtagtgagttggtctaactaactcctaactacctaaccaac 29856152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 4895817 - 4895742
Alignment:
Q  63 aatcatggaatcctaaggataaagatcata-atgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||||| || ||| |||||||||| ||||  ||||||| ||||||||||| |||| |||| ||||||||||    
T  4895817 aatcatggaatcatagggagaaagatcatagatgta-agcaagagagcaaacataagagtactcatctgggagatac 4895742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 28124585 - 28124660
Alignment:
Q  63 aatcatggaatcctaaggataaagatcata-atgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||||| || ||| |||||||||| ||||  ||||||| ||||| ||||| |||| |||||||||||||||    
T  28124585 aatcatggaatcatagggagaaagatcatagatgta-agcaagagagcaagcataagagtactcatgtgggagatac 28124660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 28126412 - 28126487
Alignment:
Q  63 aatcatggaatcctaaggataaagatcata-atgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||||| || ||| |||||||||| ||||  ||||||| ||||| ||||| |||| |||||||||||||||    
T  28126412 aatcatggaatcatagggagaaagatcatagatgta-agcaagagagcaagcataagagtactcatgtgggagatac 28126487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 47628095 - 47628063
Alignment:
Q  365 aaattgattgacattctttaatttaagggacta 397  Q
    ||||||||||||||| |||||||||||||||||    
T  47628095 aaattgattgacattatttaatttaagggacta 47628063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 62 - 304
Target Start/End: Complemental strand, 30488669 - 30488430
Alignment:
Q  62 taatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaat 161  Q
    |||||||||||||  |||||||||||||||| |  | |||||||||| || ||||| | || |||||||| ||||||||||| |||||  |||||||| |    
T  30488669 taatcatggaatctcaaggataaagatcatattaatcagcaagaaagtaagcataaaaatactcatgtggaagataccgataaaaactcattatagaa-t 30488571  T
Q  162 gaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaact 261  Q
    |||| ||||||||||||||| | | ||||| |||||| |||| |  ||||||||||||||||||||| |||||||||   ||||| |||||||||||||     
T  30488570 gaat-agattgataaaagataact-agagattacaatggtgagagctatttataggggtgagttagtctaactaacttttaactatctaaccaaccaaca 30488473  T
Q  262 aatcatactttacctatcaactaactatggtttattcactata 304  Q
    || |||| ||||| ||| |||||||||||||||||||||||||    
T  30488472 aaccataatttacatattaactaactatggtttattcactata 30488430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 24544857 - 24544777
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||||||||||| |||||||||||||||| || | ||||||||||||| ||||| |||| ||||| |||||||||    
T  24544857 ttagtaatcatggaatcccaaggataaagatcatagtgataagcaagaaagcaagcataagagtactcatgagggagatac 24544777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 25050974 - 25050851
Alignment:
Q  189 agagtacaatagtgataattatttataggggtgagttagtat---aactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaa 285  Q
    ||||||||||||||| |  ||||||||| | ||||||||| |   |||||||||  ||||||||||||||  |||||| |||| ||||| ||| | ||||    
T  25050974 agagtacaatagtgaaatatatttatagag-tgagttagtctcctaactaactcttaactacctaaccaagtaactaaccatagtttacatattatctaa 25050876  T
Q  286 ctatggtttattcactataatctaa 310  Q
    ||||||||||||||||||| |||||    
T  25050875 ctatggtttattcactatactctaa 25050851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 5377075 - 5376974
Alignment:
Q  99 agcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgataaaagatgaatgagagagtacaat 198  Q
    ||||||| ||||| ||||| |||| |||||||||||||||  ||| |||||  || |||||||||| |||||||||||||||| | |||  |||||||||    
T  5377075 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaa-tagattgataaaagat-attgaatgagtacaat 5376978  T
Q  199 agtg 202  Q
    ||||    
T  5376977 agtg 5376974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 5378930 - 5378829
Alignment:
Q  99 agcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgataaaagatgaatgagagagtacaat 198  Q
    ||||||| ||||| ||||| |||| |||||||||||||||  ||| |||||  || |||||||||| |||||||||||||||| | |||  |||||||||    
T  5378930 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaa-tagattgataaaagat-attgaatgagtacaat 5378833  T
Q  199 agtg 202  Q
    ||||    
T  5378832 agtg 5378829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 26857895 - 26857814
Alignment:
Q  222 agttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactata 304  Q
    ||||||| ||||||||||  |||||||||||||||||| |||   || |||||| |||| |||||||||| ||||||||||||    
T  26857895 agttagtctaactaactcttaactacctaaccaaccaattaactctaatttacc-atcatctaactatggcttattcactata 26857814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 15866819 - 15866738
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||| |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  15866819 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacc 15866738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 15868631 - 15868550
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||| |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  15868631 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacc 15868550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 33866338 - 33866257
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||| |||||| ||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  33866338 ttagtaatcaaggaatcccaaggattaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacc 33866257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 716305 - 716337
Alignment:
Q  365 aaattgattgacattctttaatttaagggacta 397  Q
    |||||||||||||||||||||||| ||||||||    
T  716305 aaattgattgacattctttaatttgagggacta 716337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 1088687 - 1088788
Alignment:
Q  99 agcaagaaagcaaacataatagtattcatgtgggagatac-cgatataaactagttatagaaatgaattagattgataaaagatgaatgagagagtacaa 197  Q
    ||||||| ||||||||||| |||| |||| |||||||||| | | | |||||  |||||| |||||| ||||||||||||||||| ||||  ||||||||    
T  1088687 agcaagatagcaaacataagagtactcatatgggagatactcaaaagaaactcattatag-aatgaa-tagattgataaaagatg-atgaatgagtacaa 1088783  T
Q  198 tagtg 202  Q
    |||||    
T  1088784 tagtg 1088788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 63 - 304
Target Start/End: Complemental strand, 25836605 - 25836365
Alignment:
Q  63 aatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatg 162  Q
    ||||||||| ||||| |||||||| ||| | || | ||||||||||    ||||| |||||||||||| ||||| || ||| | | |  |||||||||||    
T  25836605 aatcatggagtcctagggataaaggtcaaagtgatcagcaagaaagggtgcataagagtattcatgtgagagatgcccatagagattcattatagaaatg 25836506  T
Q  163 aattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaacta 262  Q
    |||| | |||||||||||| ||  |||||||||||| |||| | ||||||||| || |||  |||| ||||||||||| ||||||||||| |||||||||    
T  25836505 aattggtttgataaaagat-aacaagagagtacaatggtgagagttatttataaggatgaactagtctaactaactcctaactacctaactaaccaacta 25836407  T
Q  263 atcatactttacctatcaactaactatggtttattcactata 304  Q
      |||| |||| ||||||||||||||||||||||||||||||    
T  25836406 gccatagtttatctatcaactaactatggtttattcactata 25836365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 26667113 - 26667225
Alignment:
Q  192 gtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatgg 291  Q
    ||||||| |||| | |||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||| |||| ||||| ||| ||||||||||||    
T  26667113 gtacaatggtgagagttatttataggggtgagttagtctaactaactcttaactacctaactaaccaactaaccataatttacatattaactaactatgg 26667212  T
Q  292 tttattcactata 304  Q
    || ||||||||||    
T  26667213 ttaattcactata 26667225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 310
Target Start/End: Original strand, 9032697 - 9032948
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    ||||| |||||| ||||| | ||||||||  ||||||| | ||||| ||||  ||||||  | ||||||||||||||||||| ||| |||||  |  |||    
T  9032697 ttagttatcatgaaatcccagggataaagtacataatgatcagcaaaaaagagaacatacgaatattcatgtgggagatacccatagaaactcatagtag 9032796  T
Q  158 aaatgaattagattg-ataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaac 256  Q
    ||  | | ||||||| ||||||||||| | |||| ||||||| |||| |  |||||||| |||  ||||||| ||||||||||  ||||||  |||||||    
T  9032797 aa--ggaatagattggataaaagatgattaagagcgtacaatggtgaaagctatttataagggaaagttagtctaactaactcttaactactcaaccaac 9032894  T
Q  257 caactaatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    || |||| |||| ||| | ||||||||||||||| |||||||| |||| |||||    
T  9032895 cagctaaccatagttttcatatcaactaactatgatttattcattatactctaa 9032948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 304
Target Start/End: Complemental strand, 548229 - 548090
Alignment:
Q  161 tgaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaac 260  Q
    ||||||||| ||| ||||||| ||| ||||||||||||| | | | |||||||||| | ||||||||| ||||||||||  |||||||||||||||||||    
T  548229 tgaattagaatga-aaaagat-aattagagagtacaatatttaaagttatttatagtg-tgagttagtctaactaactcttaactacctaaccaaccaac 548133  T
Q  261 taatcatactttacctatcaactaactatggtttattcactata 304  Q
    |||||||| |||||| || | |||| |||| |||||||||||||    
T  548132 taatcatagtttacc-attatctaaatatgatttattcactata 548090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 43819951 - 43820012
Alignment:
Q  207 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcata 268  Q
    ||||||||||| |||||||||| | |||||||   |||||||||||||||||||||||||||    
T  43819951 ttatttataggagtgagttagtcttactaacttttaactacctaaccaaccaactaatcata 43820012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 17402816 - 17402917
Alignment:
Q  99 agcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgataaaagatgaatgagagagtacaat 198  Q
    ||||||| ||||| ||||| |||| |||||||||||||||  ||| |||||  || |||||||||| |||||||||||||||| | |||  |||||||||    
T  17402816 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaa-tagattgataaaagat-attgaatgagtacaat 17402913  T
Q  199 agtg 202  Q
    ||||    
T  17402914 agtg 17402917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 31135393 - 31135456
Alignment:
Q  192 gtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaa 255  Q
    ||||||||| || | ||||||||||| ||||||  || ||||||||||||||||||||||||||    
T  31135393 gtacaatagagagacttatttataggagtgagtcggtgtaactaactcccaactacctaaccaa 31135456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 20302861 - 20302786
Alignment:
Q  63 aatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||||  || |||  |||||||||||| | ||||||||||||||||||  | |||||||| |||||||||    
T  20302861 aatcatggaattgtagggaagaagatcataatgatcagcaagaaagcaaacataggactattcatgagggagatac 20302786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 65 - 310
Target Start/End: Original strand, 8957 - 9201
Alignment:
Q  65 tcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaa 164  Q
    ||||||||||  | |||||||||| |||||| | ||||||||||  ||||||| ||||||||||||| ||||||| |||   |||  |  ||||| ||||    
T  8957 tcatggaatctcagggataaagattataatgatcagcaagaaagagaacataagagtattcatgtggaagatacccataaggactcatagtagaa-tgaa 9055  T
Q  165 ttagatt-gataaaagatgaatgagagagtacaatagt-gataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaacta 262  Q
     |  ||| ||||||||||||||| || ||||||||||| || | |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  9056 ctttatttgataaaagatgaatg-ga-agtacaatagtcgagagttatttataggggtgagttagtgtaactaactcctaactacctaaccaaacaacta 9153  T
Q  263 atcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    | |||| || || ||| ||||||||||||||||||||||||| |||||    
T  9154 accatagttcacatataaactaactatggtttattcactatactctaa 9201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 63 - 310
Target Start/End: Original strand, 21637131 - 21637377
Alignment:
Q  63 aatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttataga--aa 160  Q
    ||||||||||||| | ||||||||||||||||| | || |||||||  ||||||| ||||||||||||| ||||||| ||| | |||   |||||   ||    
T  21637131 aatcatggaatcccatggataaagatcataatgatcagtaagaaagagaacataagagtattcatgtggaagatacccatagagact---tatagtggaa 21637227  T
Q  161 tgaattagatt-gataaaagatgaatgagagagtacaatagt-gataattatttataggggtgagttagtataactaactcccaactacctaaccaacca 258  Q
    |||| |  ||| |||||| |||||||| || ||||||||||| || | ||||||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  21637228 tgaactttatttgataaatgatgaatg-ga-agtacaatagtcgaaagttatttataagggtgagttagtgtaactaactcctaactacctaaccaacca 21637325  T
Q  259 actaatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    |||||  ||| ||  | ||| ||||||||||||||||||||||||| |||||    
T  21637326 actaactatagttctcatataaactaactatggtttattcactatactctaa 21637377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 310
Target Start/End: Original strand, 4897419 - 4897540
Alignment:
Q  187 agagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaac 286  Q
    ||||||||||||| ||| | |||||||||||| ||||||||| ||||||||||  |||||||||| ||||||||||| |||| |||||| || | |||||    
T  4897419 agagagtacaatattgagagttatttataggg-tgagttagtctaactaactcttaactacctaatcaaccaactaaccatagtttacc-attatctaac 4897516  T
Q  287 tatggtttattcactataatctaa 310  Q
    |||||||||||||||||| |||||    
T  4897517 tatggtttattcactatactctaa 4897540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 310
Target Start/End: Complemental strand, 33690044 - 33689854
Alignment:
Q  119 agtattcatgtgggagataccgatataaactagttatagaaatgaattagatt-gataaaagatgaatgagagagtacaatagtgataattatttatagg 217  Q
    ||||||||||||||||||||| ||| | |||  | |||||  ||||||||||| |||||||||| ||  | | ||||||||||||| |  |||||||| |    
T  33690044 agtattcatgtgggagatacccatagagactcataatagag-tgaattagatttgataaaagat-aacaaaatagtacaatagtgagagctatttataag 33689947  T
Q  218 ggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    ||  ||||||| ||| | ||||  ||||||||||| |||||| ||  |||| ||||| ||| |||||||||||||||| ||| |||| |||||    
T  33689946 ggcaagttagtctaattgactcttaactacctaactaaccaattatccatagtttacttattaactaactatggtttaatcattatactctaa 33689854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 303
Target Start/End: Complemental strand, 6742539 - 6742424
Alignment:
Q  191 agtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaacta-- 288  Q
    ||||||||||||| | ||||||||||  || | ||||| ||||||||||  || ||||||||||||||||||| |||| ||||  ||| || ||||||      
T  6742539 agtacaatagtgagagttatttatagaagtaaattagtttaactaactcttaattacctaaccaaccaactaaccataatttatatattaattaactata 6742440  T
Q  289 -tggtttattcactat 303  Q
     |||||||||||||||    
T  6742439 ttggtttattcactat 6742424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 302
Target Start/End: Complemental strand, 33688296 - 33688153
Alignment:
Q  159 aatgaattagatt-gataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaacc 257  Q
    ||||||||||||| |||||||||| ||  ||||| |||||| |||| |  |||| |||| |||| |||||| | | ||||||  || ||||||||||||     
T  33688296 aatgaattagatttgataaaagat-aacaagagaatacaatggtgagagctattaatagaggtgggttagtcttagtaactcttaaatacctaaccaact 33688198  T
Q  258 aactaatcatactttacctatcaactaactatggtttattcacta 302  Q
    ||| || |||| ||||| ||| |||||||||||||||| ||||||    
T  33688197 aaccaaccataatttacatattaactaactatggtttaatcacta 33688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 20012927 - 20013017
Alignment:
Q  69 ggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaa 159  Q
    ||||||| |||||| ||||||||| || | | ||||||||||| ||||| |||| |||||||||||||||  ||| |||||  ||||||||    
T  20012927 ggaatcccaaggatgaagatcatagtgatcaccaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa 20013017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 3161587 - 3161542
Alignment:
Q  265 catactttacctatcaactaactatggtttattcactataatctaa 310  Q
    |||| |||| ||||||||||||| |||||||||||||||| |||||    
T  3161587 catagtttatctatcaactaactctggtttattcactatactctaa 3161542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 39787051 - 39787132
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||| ||||||  |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  39787051 ttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacc 39787132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 57 - 310
Target Start/End: Complemental strand, 42665172 - 42664921
Alignment:
Q  57 attagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttata 156  Q
    ||||||||||||| ||| |||||||||||| ||||| || |  || ||||||  | ||||| |||||| || ||||||||||| ||| |||||  |  ||    
T  42665172 attagtaatcatgaaattctaaggataaaggtcatagtgatcggctagaaagagagcataagagtatttatctgggagatacccatagaaactcatagta 42665073  T
Q  157 gaaatgaattagatt-gataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaa 255  Q
    ||| ||||| ||||| |||||||||| ||  ||| |||||||| |||| || |||||||| |||||||||||| ||||||||||  |||||||||| |||    
T  42665072 gaa-tgaat-agatttgataaaagat-aacaagatagtacaattgtgagaactatttataagggtgagttagtctaactaactcttaactacctaaacaa 42664976  T
Q  256 ccaactaatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    |||||||| | || ||||| ||| |||||||||||||||||||| |||| |||||    
T  42664975 ccaactaaccgtagtttacatattaactaactatggtttattcattatactctaa 42664921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 187 - 310
Target Start/End: Original strand, 10032675 - 10032797
Alignment:
Q  187 agagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaac 286  Q
    ||||||||||||||||| | |||||||||||| ||||||||| ||||  ||||  |||||||||||||||||||||| |||| ||||| | |||||||||    
T  10032675 agagagtacaatagtgagagttatttataggg-tgagttagtctaaccgactcttaactacctaaccaaccaactaaccatagtttacatctcaactaac 10032773  T
Q  287 tatggtttattcactataatctaa 310  Q
    |||||||||||| ||||| |||||    
T  10032774 tatggtttattctctatactctaa 10032797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 5653277 - 5653372
Alignment:
Q  170 ttgataaaagatgaatgagagagtacaatagt-gataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatca 266  Q
    |||||||||||||||||||||  ||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  5653277 ttgataaaagatgaatgagag--tacaatagttgagacttatttataggggtgagttagtataactaactcctaactacctaactaactaactaatca 5653372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 252
Target Start/End: Original strand, 56074644 - 56074832
Alignment:
Q  63 aatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatg 162  Q
    |||||||||||| || |||  ||| |||||||| | ||||||||||||| ||||| |||| |||||||||||||||  ||| ||||| ||||||||||||    
T  56074644 aatcatggaatcatagggaagaaggtcataatgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcgttatagaaatg 56074743  T
Q  163 aattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactccc-aactacctaac 252  Q
    || |||| |||||||||||| ||||   | |||| ||| |  || |||||||||| ||||||| |  |||||||||||| |||||||||||    
T  56074744 aa-tagaatgataaaagatg-atgatttaatacactagagtgaagtatttataggagtgagttggagtaactaactccctaactacctaac 56074832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 52545107 - 52545217
Alignment:
Q  69 ggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattag 168  Q
    ||||||| |||||||||||||||| || | ||||||||||| | ||||| |||| |||||||||||||||  ||| |||||  |||||| |||||| |||    
T  52545107 ggaatcccaaggataaagatcatagtgatcagcaagaaagcgagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaa-tag 52545204  T
Q  169 attgataaaagat 181  Q
    |||||||||||||    
T  52545205 attgataaaagat 52545217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 42665175 - 42665255
Alignment:
Q  230 taactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    ||||||||||  |||||||||| |||  |||||| |||| ||||| ||| ||||||||||||||||||||||||| |||||    
T  42665175 taactaactcttaactacctaaacaaataactaaccataatttacatattaactaactatggtttattcactatattctaa 42665255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 18395638 - 18395716
Alignment:
Q  60 agtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||||||||| ||||| | |||||||| ||||| || ||||||||||||  | ||||| ||||||||||||||||||||    
T  18395638 agtaatcatgaaatcccacggataaaggtcatagtgattagcaagaaagagagcataagagtattcatgtgggagatac 18395716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 18812660 - 18812781
Alignment:
Q  189 agagtacaatagtgataattatttataggggtgagttagta--taactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaac 286  Q
    ||||||||||||||| |  ||||||||| | |||||||||   ||||||||||  ||||||||||| ||  |||||| |||| ||||| ||| | ||||     
T  18812660 agagtacaatagtgagagatatttatagag-tgagttagttcgtaactaactcttaactacctaactaagtaactaaccatagtttacatattatctaat 18812758  T
Q  287 tatggtttattcactataatcta 309  Q
    |||||||||||||||||| ||||    
T  18812759 tatggtttattcactatactcta 18812781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 51295402 - 51295323
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagata 137  Q
    |||||||| |||||||||||||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||    
T  51295402 ttagtaattatggaatcctaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagata 51295323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 5653165 - 5653246
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatacc 139  Q
    |||||||||||||||| | |||||||||||||||| || | ||| ||||||  | ||||   ||||||||||||||||||||    
T  5653165 ttagtaatcatggaatgccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacc 5653246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 8678637 - 8678568
Alignment:
Q  191 agtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaac 260  Q
    |||| |||||||| | ||||||||||||||| |||||  ||||||||| | ||||||||| |||||||||    
T  8678637 agtataatagtgaaagttatttataggggtgggttagactaactaactgctaactacctagccaaccaac 8678568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 483
Target Start/End: Original strand, 43081812 - 43081856
Alignment:
Q  439 tatttcataaatttggaggactaaattgactgacccttacaattt 483  Q
    |||||| ||||||||  ||||||||||||| ||||||||||||||    
T  43081812 tatttcgtaaatttgatggactaaattgacagacccttacaattt 43081856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 54296649 - 54296617
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatca 90  Q
    |||||||||||||||||| ||||||||||||||    
T  54296649 ttagtaatcatggaatccaaaggataaagatca 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 20957568 - 20957429
Alignment:
Q  170 ttgataaaagatgaatgagagagtacaatagt-gataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcata 268  Q
    |||| ||||||||||||||||  ||||||||| || | |||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||    
T  20957568 ttgacaaaagatgaatgagag--tacaatagttgagacttatttataggggtgagttagtctaactaactcacaactacctaactaactaactaaccata 20957471  T
Q  269 ctttacctatcaactaactatggtttattcactataatctaa 310  Q
     ||||| ||| | ||||||||||||||||||||||| |||||    
T  20957470 atttacatataacctaactatggtttattcactatactctaa 20957429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 20957740 - 20957612
Alignment:
Q  170 ttgataaaagatgaatgagagagtacaatagt-gataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcata 268  Q
    |||| ||||||||||||||||  ||||||||| || | |||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||    
T  20957740 ttgacaaaagatgaatgagag--tacaatagttgagacttatttataggggtgagttagtctaactaactcacaactacctaactaactaactaaccata 20957643  T
Q  269 ctttacctatcaactaactatggtttattca 299  Q
     ||||| ||| | ||||||||||||||||||    
T  20957642 atttacatataacctaactatggtttattca 20957612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 310
Target Start/End: Original strand, 17149031 - 17149174
Alignment:
Q  166 tagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatc 265  Q
    |||||||||||||||| ||||| ||||||||||  |||   ||| ||| |||| ||| ||||| ||||| ||||| || ||| ||| ||||||||||| |    
T  17149031 tagattgataaaagat-aatgatagagtacaatgatgagggttacttacagggatgaattagtctaactgactcctaattacttaaacaaccaactaacc 17149129  T
Q  266 atactttacctatcaactaactatggtttattcactataatctaa 310  Q
    ||| |||||||||||||||||||||||||||||| |||| |||||    
T  17149130 ataatttacctatcaactaactatggtttattcaatatattctaa 17149174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 14007739 - 14007624
Alignment:
Q  191 agtacaatagtgataattatttataggggtgagt----tagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaac 286  Q
    |||||||| |||| | ||||||||| ||||||||    |||| ||||||||||  |||||||||||||||||||||| |||| ||||| ||| |||||||    
T  14007739 agtacaatggtgagagttatttatatgggtgagtaagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatattaactaac 14007640  T
Q  287 tatggtttattcacta 302  Q
    ||||||||||||||||    
T  14007639 tatggtttattcacta 14007624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 18612038 - 18612212
Alignment:
Q  63 aatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatg 162  Q
    |||||||||||| | ||||  ||| |||||||  | ||||||||||||| ||||| |||| ||||||||||||||   | | |||||  |||||||||||    
T  18612038 aatcatggaatcattaggaagaaggtcataatcatcagcaagaaagcaagcataagagtactcatgtgggagatatttacaaaaactcattatagaaatg 18612137  T
Q  163 aattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaact 238  Q
    || ||||||||||||||   |||||  ||||||||||| |  || |||||||||| ||||||| |  |||||||||    
T  18612138 aa-tagattgataaaagtataatgattgagtacaatagagtgaagtatttataggagtgagttggagtaactaact 18612212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 17148626 - 17148701
Alignment:
Q  62 taatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagatac 138  Q
    |||| ||||||||| ||| ||||||||||||||| | | ||| ||||||||||||| |||| |||||||||||||||    
T  17148626 taattatggaatccaaag-ataaagatcataatgatcatcaaaaaagcaaacataacagtactcatgtgggagatac 17148701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 8951382 - 8951427
Alignment:
Q  438 ctatttcataaatttggaggactaaattgactgacccttacaattt 483  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||    
T  8951382 ctatttcacaaatttggaggactaaattgacagacccttataattt 8951427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 9610 - 9476
Alignment:
Q  161 tgaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaac 260  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||| ||||||||| |||||||| |  |||||||||||||||||||    
T  9610 tgaattagattga-aaaagataact-agagagtacaatagtgatagttatttataggg-tgagttagtctaactaacacttaactacctaaccaaccaac 9514  T
Q  261 taatcatactttacctatcaactaactatggtttattc 298  Q
    ||| |||| ||||| | |||||||||||||||||||||    
T  9513 taaccatagtttacatctcaactaactatggtttattc 9476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 11232 - 11098
Alignment:
Q  161 tgaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaac 260  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||  |||||||||||||||||||    
T  11232 tgaattagattga-aaaagataact-agagagtacaatagtgatagttatttataggg-tgagttagtctaactaactcttaactacctaaccaaccaac 11136  T
Q  261 taatcatactttacctatcaactaactatggtttattc 298  Q
    ||| |||| ||||  | |||||||||||||||||||||    
T  11135 taaccatagtttatatctcaactaactatggtttattc 11098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 9938 - 9804
Alignment:
Q  161 tgaattagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaac 260  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||| ||||||||| |||||||| |  |||||||||||||||||||    
T  9938 tgaattagattga-aaaagataact-agagagtacaatagtgatagttatttataggg-tgagttagtctaactaacacttaactacctaaccaaccaac 9842  T
Q  261 taatcatactttacctatcaactaactatggtttattc 298  Q
    ||| |||| ||||| | |||||||||||||||||||||    
T  9841 taaccatagtttacatctcaactaactatggtttattc 9804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 59023 - 58882
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    |||||||||||||||||| |||||||||||||||| || | ||||||||||||| ||||| |||| |||||||||||||||  ||| |||||  ||||||    
T  59023 ttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag 58924  T
Q  158 aaatgaattagattgataaaagatgaatgagagagtacaatagtg 202  Q
     |||||| ||||||||||||||||| ||||  |||||||||||||    
T  58923 -aatgaa-tagattgataaaagatg-atgaatgagtacaatagtg 58882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 35674965 - 35675058
Alignment:
Q  207 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcac 300  Q
    ||||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||| |||| ||||| ||| ||||||||||| |||||||||    
T  35674965 ttatttataggagtgagttagtctaactaactcctaactatctaactaaccaactaaccatagtttacatattaactaactatgatttattcac 35675058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 19473769 - 19473649
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    |||||||||||||||||| |||||||||||||||| || | |||||||||||||  |||| |||| |||||||||||||||  ||| |||||  ||||||    
T  19473769 ttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag 19473670  T
Q  158 aaatgaattagattgataaaaga 180  Q
     |||||| |||||||||| ||||    
T  19473669 -aatgaa-tagattgatagaaga 19473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 19544694 - 19544574
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    |||||||||||||||||| |||||||||||||||| || | |||||||||||||  |||| |||| |||||||||||||||  ||| |||||  ||||||    
T  19544694 ttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag 19544595  T
Q  158 aaatgaattagattgataaaaga 180  Q
     |||||| |||||||||| ||||    
T  19544594 -aatgaa-tagattgatagaaga 19544574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 19588002 - 19588122
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    |||||||||||||||||| |||||||||||||||| || | |||||||||||||  |||| |||| |||||||||||||||  ||| |||||  ||||||    
T  19588002 ttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag 19588101  T
Q  158 aaatgaattagattgataaaaga 180  Q
     |||||| |||||||||| ||||    
T  19588102 -aatgaa-tagattgatagaaga 19588122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 14939752 - 14939629
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatag 157  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||||||||| ||||  |||| |||||| | ||||||   || |||||  ||||||    
T  14939752 ttagtaatcatggaatcctaaggataaagatcatagtgatcagcaagaaagcaagcatatgagtactcatgtagaagatactcgtagaaactcattatag 14939653  T
Q  158 aaatgaattagattgataaaagatga 183  Q
     |||||| ||||||||||||||||||    
T  14939652 -aatgaa-tagattgataaaagatga 14939629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 3379126 - 3379248
Alignment:
Q  76 taaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgata 175  Q
    |||||||||||||||||||| | |||||||||||||  |||| |||| |||||||||||||||  ||| |||||  |||||| |||||| ||||||||||    
T  3379126 taaggataaagatcataatgatcagcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcattatag-aatgaa-tagattgata 3379223  T
Q  176 aaagatgaatgagagagtacaatagt 201  Q
    ||| ||| ||||  ||||||||||||    
T  3379224 aaaaatg-atgaatgagtacaatagt 3379248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 31032008 - 31032118
Alignment:
Q  69 ggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattag 168  Q
    ||||||| ||||| |||||||||| || | ||||||||||||| ||||| |||| |||||||||||||||  ||| |||||  |||||| |||||| |||    
T  31032008 ggaatcccaaggacaaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaa-tag 31032105  T
Q  169 attgataaaagat 181  Q
    |||||||||||||    
T  31032106 attgataaaagat 31032118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 29456289 - 29456386
Alignment:
Q  207 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactata 304  Q
    ||||||| | |||||||||||| ||| ||||||  ||||||||||||||  ||||||  ||| ||||| |||  |||||||||| || ||||| ||||    
T  29456289 ttatttacaagggtgagttagtctaaataactcataactacctaaccaattaactaactatagtttacttattgactaactatgattgattcattata 29456386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 26516918 - 26516874
Alignment:
Q  438 ctatttcataaatttggaggactaaattgactgacccttacaatt 482  Q
    |||||||| ||||| | ||||||||||||||| ||||||||||||    
T  26516918 ctatttcagaaattcgaaggactaaattgacttacccttacaatt 26516874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 28492 - 28401
Alignment:
Q  219 gtgagttagtataactaactcccaactacctaaccaaccaactaatcatactttacctatcaactaactatggtttattcactataatctaa 310  Q
    |||||||| | ||||||||||  ||||   ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||    
T  28492 gtgagttaatctaactaactcttaactgtataaccaaccaactaaccatagtttacctatcaactaactatggtttattcaatatactctaa 28401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 39359 - 39258
Alignment:
Q  81 ataaagatcataatgtttagcaagaaagcaaacataatagtattcatgtgggagataccgatataaactagttatagaaatgaattagattgataaaaga 180  Q
    |||||||||||| || | ||||||||||||||  ||| |||| |||||||||||||||  ||| |||||  ||||||||||||| |||||||||||||||    
T  39359 ataaagatcatagtgatcagcaagaaagcaaaattaagagtactcatgtgggagatactcataaaaactcattatagaaatgaa-tagattgataaaaga 39261  T
Q  181 tga 183  Q
    |||    
T  39260 tga 39258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 5486 - 5605
Alignment:
Q  166 tagattgataaaagatgaatgagagagtacaatagtgataattatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatc 265  Q
    |||||||||||||||||||| | | |||| ||| |||||||||||||||| |  ||||||||| | ||||||||| ||  ||||||| || ||| ||| |    
T  5486 tagattgataaaagatgaataaaaaagtataatggtgataattatttatatgaatgagttagtcttactaactcctaagcacctaactaatcaattaacc 5585  T
Q  266 atactttacctatcaactaa 285  Q
    ||| |||| |||||||||||    
T  5586 atagtttatctatcaactaa 5605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 15796 - 15725
Alignment:
Q  58 ttagtaatcatggaatcctaaggataaagatcataatgtttagcaagaaagcaaacataatagtattcatgt 129  Q
    |||||||||||||||||  ||||||||||||||||    | ||||||||||||| ||||| |||| ||||||    
T  15796 ttagtaatcatggaatctcaaggataaagatcatagcaatcagcaagaaagcaagcataaaagtactcatgt 15725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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