View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12034_low_7 (Length: 443)
Name: NF12034_low_7
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 47333587 - 47333162
Alignment:
| Q |
1 |
aaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaatagaattctgagtttcaggatgataaatctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47333587 |
aaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaatagaactctgagtttcaggatgataaatctgaaaaca |
47333488 |
T |
|
| Q |
101 |
atgttcttcaccttcaacatgaacaagttccacatcacctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333487 |
atgttcttcaccttcaacatgaacaagttccacatcacctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatca |
47333388 |
T |
|
| Q |
201 |
ttcccagcaacaaaaatcaatatcttaggacaaccaataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333387 |
ttcccagcaacaaaaatcaatatcttaggacaaccaataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccag |
47333288 |
T |
|
| Q |
301 |
gtgcatcaggatacacaaaattccaaactttcataggtgaactttgttcatgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaagg |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47333287 |
gtgcatcaggatacacaaaattccatactttcataggtgaactttgttcatgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaagg |
47333188 |
T |
|
| Q |
401 |
aaaagcaagtaatgctcctctaattt |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47333187 |
aaaagcaagtaatgctcctctaattt |
47333162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
269 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
328 |
Q |
| |
|
|||||| |||| ||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 328
Target Start/End: Complemental strand, 17842031 - 17841841
Alignment:
| Q |
138 |
cctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaat-atcttaggacaacca |
236 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| ||||||| |||||| || ||||| |||| |||||||||||| ||| |||| ||| || ||||||| |
|
|
| T |
17842031 |
cctttccaaccactcttcttcacaagctcataataccaaacccctctctcccttaatccatctttcccagcaacacaaa-caatcatcctatcacaacca |
17841933 |
T |
|
| Q |
237 |
ataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
328 |
Q |
| |
|
| ||||||||| || || | ||| ||| |||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
17841932 |
agtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 653540 - 653632
Alignment:
| Q |
244 |
ccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
336 |
Q |
| |
|
||||||| || ||| ||||||| ||||||| | || |||||||||||||||||| ||||| ||| |||||||| ||||| ||||| |||| |
|
|
| T |
653540 |
ccaaactaggtgcaccaatagcacaaggattaaccatagggttatcaatcccaccctttgcattagggtacacaaagttccacactttaatag |
653632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University