View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_8 (Length: 411)
Name: NF12034_low_8
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 390
Target Start/End: Original strand, 42178312 - 42178701
Alignment:
| Q |
6 |
agaagcataggcacattcatgagacaagcaaaacaagcatggaaaacacattcatgtcatgtgcaatttgtgtgatagagtatcatgccatatagaaccg |
105 |
Q |
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| T |
42178312 |
agaagcataagcacattcatgagacaagcaaaacaagcatggaaaacacactcatgtcatgtgcaatttgtgtgatagagtatcatgccatatagaaccg |
42178411 |
T |
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| Q |
106 |
ctcatgaaacaaaa-tgcaccactcaaattaacgtcatagcaagcttaggtgtaaaaa-ttgagagatattcttcaaggcaac-tataattttatttatt |
202 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
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| T |
42178412 |
ctcatgaaacaaaaatgcacctctcaaattaacgtcatagcaagcttaggtgtaaaaaattgtgagatattcttcaaggcaacatataattttatttatt |
42178511 |
T |
|
| Q |
203 |
aattcataggtttcatcaaaatagcatggaacagaatattcaataattgaaggggaataagatatgcatgcatctaccttattgtaaacttcatccctta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42178512 |
aattcataggtttcatcaaaatagcatggaacagaatattcaataattgaagaggaataagatatgcatgcatctaccttattgtaaacttcatccctta |
42178611 |
T |
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| Q |
303 |
aacaaacaagccagagaacactgcttatttcgacccacgtgcac--nnnnnnntgtgaaagtatagtgataagggcacgaaggaccaaaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42178612 |
aacaaacaagccagagaacactgcttatttcgacccacgtgcacaaaaaaaaatgtgaaagtatagtgataagggcacgaaggaccaaaa |
42178701 |
T |
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