View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12034_low_9 (Length: 374)
Name: NF12034_low_9
Description: NF12034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12034_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 4039349 - 4039004
Alignment:
| Q |
17 |
atcaggaacatcaacacttacgtcattattgacttcctcttcaccatcttctgaattgctatcaccacttgaagtttgtgtcacattgtttgatttagat |
116 |
Q |
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| T |
4039349 |
atcaggaacatcaacacttacatcattattgacttcctcttcaccatcttctgaattgctatcaccacttgaagtttctgtcacattgtttgatttagat |
4039250 |
T |
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| Q |
117 |
tccatattcatttcatcctccttgcagccattgttttcggttaaacacgattcaaaactactcgaaatgtaatcgaattgtgcagtgtcattgatcaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039249 |
tccatattcatttcatcctccttgcagccattgttttcggttaaacacgattcaaaactactcgaaatgtaatcgaattgtgcagtgtcattgatcaatt |
4039150 |
T |
|
| Q |
217 |
cattgttgcttgtgctataatcctcatggtcattaaggaaatcagtgaactgatcaattgagaaatcttttgataattctccatatgcatccacttgttg |
316 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4039149 |
cattgttgcttgtgctataatcctcatgatcattgaggaaatcagtgaattgatcaattgagaaatcttttgatacttctccatatgcatccacttgttg |
4039050 |
T |
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| Q |
317 |
ttgcatctcctgacgatcctgatcattggctcgttgttgctcccta |
362 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4039049 |
ttgcatctcctgacgatcgtgatcattggctcgttgttgctcccta |
4039004 |
T |
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