View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12035_high_1 (Length: 732)
Name: NF12035_high_1
Description: NF12035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12035_high_1 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 14 - 711
Target Start/End: Original strand, 42946 - 43641
Alignment:
| Q |
14 |
cagtttttgctctggatttcagcttctaattctgcagtagggggtttggggaagtgcataaaaaggttaggctgcagcattaacttctttaacttctata |
113 |
Q |
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| T |
42946 |
cagtttttgctctgaatttcagcttctaattctgcagtagggggtttggggaagtgcataaaaaggttaggttgcagcattaacttctttaacttctata |
43045 |
T |
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| Q |
114 |
tatatgttaatccttatttggtttggtgcaataataatataaacacagaagtaataactagcatgaaaaacctacttccttgtatacatatattattacc |
213 |
Q |
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| T |
43046 |
tatatgttaatccttatttggtttggtgcaataataatataaacacagaagtaataactagcatgaaaaacctacttccttgtatacatatattattacc |
43145 |
T |
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| Q |
214 |
tgagtttgaattatgaagatcttcaagaatttcctctacaaatgccaaaaccgaatttttcaaaacacaattcttctcatccagaagttgaatttcattt |
313 |
Q |
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| T |
43146 |
tgagtttgaattatgaagatcttcaagaatttcctctacaaatgccaaaaccgaatttttcaaaacacaattcttctcatccagaagttgaatttcattt |
43245 |
T |
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| Q |
314 |
tcaagtgaatatttctctgccaacaaagtcctgactttacaattttctctattgtcaatttctctttgaaattctaggcagtgtgctgtaaattcctccc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
43246 |
tcaagtgaatatttctctgccaacaaagtcctgactttacaattttctctattgtcaatttctctttgaaattctaggcagtgtgttgtaaattcttccc |
43345 |
T |
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| Q |
414 |
tgcttggaaacaaatcattcggtcataaaactatgatgcaacattcaaatgttacataattaaggtacattacagtgacattagaatatagagacaaatt |
513 |
Q |
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| T |
43346 |
tgcttggaaacaaatcaatcggtcattaaattaggatgcaacattcaaatgttacataattaaggtacattacagtgacattagaatatagagataaatt |
43445 |
T |
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| Q |
514 |
catatatctgagttggagtatcttttgctattttcctaacatacactgtttcattttctatttgaatagaaaaacaatacagtgatatatatgttcaaac |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
43446 |
catatatctgagttggagtatcttttgctattttcctaacatacactgtttcattttctatttgaatagaaaaacaatacagtg--acatatgttcaaac |
43543 |
T |
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| Q |
614 |
agaaagacaacaatttatttatgttagttttatatgtagccaaatgacaaacaatgagacatgagaactaaccaaaaataccactccctccgtcctat |
711 |
Q |
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| T |
43544 |
agaaagacaacaatttatttatgttagttttatatgtagccaaatgacaaacaatgagacatgagaactaaccaaaaataccactccctccgtcctat |
43641 |
T |
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