View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12035_high_4 (Length: 295)
Name: NF12035_high_4
Description: NF12035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12035_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 44965759 - 44965493
Alignment:
| Q |
19 |
tatcatcactcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965759 |
tatcatcactcctgttcgccggagaactagctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaa |
44965660 |
T |
|
| Q |
119 |
actcccctgtttctctttcctcaaagagccaaccgccggtgaagacgacggcgaagccgtcactgtcatcccctcgccggagaatttcaccttatcacca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965659 |
actcccctgtttctctttcctcaaagagccaaccgccggtgaagacgacggtgaagctgtcactgtcatcccctcgccggagaatttcaccttatcacca |
44965560 |
T |
|
| Q |
219 |
tacctcttcgaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965559 |
tacctcttcgaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttg |
44965493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University