View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12035_low_2 (Length: 568)
Name: NF12035_low_2
Description: NF12035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12035_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 44 - 549
Target Start/End: Original strand, 8403091 - 8403597
Alignment:
| Q |
44 |
ttgctcaataatgaattaaaattctcaaattgcaatgcaggcaaaatataatgtttatcgtcaacattatcattttagaactatgtttgaaccatgccgc |
143 |
Q |
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| T |
8403091 |
ttgctcaataatgaattaaaattctcaaattgcaatggaggcaaaagataatggttatcgtcaacattatcattttagaactatgtttgaaccatgccgc |
8403190 |
T |
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| Q |
144 |
tattcatttgtcccttttgctcattaacatttccaagattcatgtgaatatgacatttttt--gttaattagaggatacatcatttttgttcatatcatg |
241 |
Q |
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| T |
8403191 |
tattcatttgtcccttttgctcattaacatttccaagattcatgtgaatatggcattttttttgttaattaggggatacatcatttt-gttcatatcatg |
8403289 |
T |
|
| Q |
242 |
gagaatatttccctgtccgggttgtgtcaacgcccaacacttggttcaatctggccatctaggtggccaaaattgatcaagcattgtaatatatattcat |
341 |
Q |
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| T |
8403290 |
gagaatatttccctatccgggttgcgtcaacgcccaacacttggttcaatctggccatctaggtggccaaaattgatcaagcattgttatatatattcat |
8403389 |
T |
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| Q |
342 |
caagcatttttgtacccattgtatttattatgagaaaaatgggagtacattatacaattctctaacatgtgttaagtaagagtttcacctcaaacgttca |
441 |
Q |
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| T |
8403390 |
caagcattgtcgtacccattgtatttattatgagaaaaatgggagtacattatacaattctctaacatgtgttaagtaagagtttcacctcaaacgttca |
8403489 |
T |
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| Q |
442 |
acatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaattaaaacaaaaatgttgttttcagaagagcttgtt |
541 |
Q |
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| T |
8403490 |
acatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaatcaaaacaaaaatgttgttttcagaagagcttgtt |
8403589 |
T |
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| Q |
542 |
ggcgaatt |
549 |
Q |
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| T |
8403590 |
ggcgaatt |
8403597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 64 - 406
Target Start/End: Original strand, 8428991 - 8429336
Alignment:
| Q |
64 |
attctcaaattgcaatgcaggcaaaatataatgtttatcgtcaacattatcattttagaactatgtttgaaccatgccgctattcatttgtcccttttgc |
163 |
Q |
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| T |
8428991 |
attctcatattgcaatggtggcaaacgataatggttaatgtcgagattggcattttagaactatgtttgaaccatgtcgctattcatttgtctcctatgc |
8429090 |
T |
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| Q |
164 |
tcattaacatttccaagattcatg----tgaatatgacattttttgttaattagaggatacatcatttttgttcatatcatggagaatatttccctgtcc |
259 |
Q |
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| T |
8429091 |
tcattaacattcccaagattcatgcatatgaatatggcatttttcgtcaattaggggataaatga-ttttgt---tatcctggagagtgtttccctatcc |
8429186 |
T |
|
| Q |
260 |
gggttgtgtcaacgcccaacacttggttcaatctggcc-----atctaggtggccaaaattgatcaagcattgtaatatatattcatcaagcatttttgt |
354 |
Q |
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| T |
8429187 |
aggttgtgtcaatgcctaacacttggttcaatgtgaccacctaatctaggtggccaaaacagatcaagcatcgt--tgtattttccacaagcattatcgt |
8429284 |
T |
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| Q |
355 |
acccattgtatttattatgagaaaaatgggagtacattatacaattctctaa |
406 |
Q |
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| T |
8429285 |
acccgttgtatttactataagaaaaatgggagtacattatacaattctctaa |
8429336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 549
Target Start/End: Original strand, 8429362 - 8429452
Alignment:
| Q |
451 |
tttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaattaaaacaaaaatgttgttttcagaagagcttgttggcgaatt |
549 |
Q |
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| T |
8429362 |
tttattttcaaaataattgaaagaattcgtatgaaaagaatgaatcaaac--------aaaaaaaaaatgttgttttcagaagagtttgttggcgaatt |
8429452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 549
Target Start/End: Original strand, 8429344 - 8429452
Alignment:
| Q |
429 |
cctcaaacgttcaacatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaattaaaacaaaaatgttgttttc |
528 |
Q |
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| T |
8429344 |
cctcaaacgttcaacggttttattt----tcaaaataattgaaagaattcgtatgaaaagaatgaatcaaacaaaaaa--------aaaatgttgttttc |
8429431 |
T |
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| Q |
529 |
agaagagcttgttggcgaatt |
549 |
Q |
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| T |
8429432 |
agaagagtttgttggcgaatt |
8429452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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