View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12035_low_3 (Length: 456)

Name: NF12035_low_3
Description: NF12035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12035_low_3
NF12035_low_3
[»] chr3 (11 HSPs)
chr3 (1-441)||(9308621-9309065)
chr3 (159-254)||(36430162-36430256)
chr3 (171-254)||(27221606-27221689)
chr3 (171-254)||(37921781-37921864)
chr3 (171-273)||(46278786-46278894)
chr3 (179-254)||(35127000-35127075)
chr3 (179-254)||(2545215-2545290)
chr3 (1-76)||(35126134-35126209)
chr3 (1-76)||(36431932-36432007)
chr3 (1-76)||(37920861-37920936)
chr3 (251-285)||(9291952-9291986)
[»] chr5 (8 HSPs)
chr5 (171-291)||(2643469-2643589)
chr5 (164-254)||(11016235-11016325)
chr5 (1-76)||(11017298-11017373)
chr5 (1-76)||(2642628-2642703)
chr5 (1-76)||(2315683-2315760)
chr5 (77-137)||(14434758-14434817)
chr5 (9-76)||(14434615-14434681)
chr5 (201-242)||(14435282-14435323)
[»] chr4 (14 HSPs)
chr4 (171-293)||(25536848-25536977)
chr4 (172-293)||(25516641-25516769)
chr4 (159-254)||(2035212-2035303)
chr4 (220-291)||(50063910-50063981)
chr4 (178-254)||(28071217-28071293)
chr4 (1-76)||(25516395-25516470)
chr4 (1-76)||(50064873-50064948)
chr4 (77-138)||(28071028-28071088)
chr4 (77-131)||(50064070-50064123)
chr4 (27-76)||(2033984-2034033)
chr4 (1-76)||(25537215-25537291)
chr4 (251-291)||(2035313-2035353)
chr4 (77-132)||(2035114-2035168)
chr4 (253-291)||(28071305-28071343)
[»] chr8 (15 HSPs)
chr8 (164-254)||(990102-990192)
chr8 (171-254)||(13958552-13958635)
chr8 (1-76)||(13958902-13958977)
chr8 (197-254)||(11676552-11676609)
chr8 (197-254)||(11668250-11668307)
chr8 (1-76)||(7838980-7839056)
chr8 (1-76)||(989440-989515)
chr8 (77-140)||(33881057-33881119)
chr8 (77-131)||(29669086-29669139)
chr8 (202-254)||(7839829-7839881)
chr8 (220-254)||(29668941-29668975)
chr8 (251-291)||(7839891-7839931)
chr8 (251-291)||(11676502-11676542)
chr8 (251-285)||(30735816-30735850)
chr8 (30-76)||(33881195-33881241)
[»] chr6 (12 HSPs)
chr6 (172-254)||(3185831-3185913)
chr6 (171-254)||(9673-9756)
chr6 (171-254)||(12399-12482)
chr6 (1-76)||(11872-11947)
chr6 (1-76)||(30639286-30639361)
chr6 (202-254)||(30641461-30641513)
chr6 (1-76)||(3185541-3185615)
chr6 (77-132)||(3185694-3185748)
chr6 (76-132)||(12187-12241)
chr6 (77-117)||(30639539-30639579)
chr6 (251-291)||(9766-9806)
chr6 (251-291)||(12492-12532)
[»] chr1 (4 HSPs)
chr1 (172-251)||(23552376-23552455)
chr1 (251-293)||(35754225-35754267)
chr1 (220-251)||(8082035-8082066)
chr1 (171-204)||(35754296-35754329)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 9308621 - 9309065
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaataataaataaatatatgaatatac 100  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||    
T  9308621 caaagttctaacatcaaagtcccaattttttctctaaaatttcatctaatatttgttacctaaatactcaatttaataataaataaatatataaataaac 9308720  T
Q  101 aaacaaaccatctaaaaagtaattattaattactattatt---gaaggaagagtgaagctgcaacaaaatcgcaaatcgcaaacctgaagaaagagaatg 197  Q
    ||| |||||||||||||||||||||||||||| |||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9308721 aaataaaccatctaaaaagtaattattaattattattattattgaatgaagagtgaagctgcaacaaaatcgcaaatcgcaaacctgaagaaagagaatg 9308820  T
Q  198 aagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagattagattcagattccttcttctcctattcttatggca 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  9308821 aagcaagaaacggcaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagattagattcagattccttcttcttctattctcatggca 9308920  T
Q  298 acacttggaggaatttcttcaagcttgctctctcactcaaaaccctgcacttctgtttttcgacatctcttccttcgtagaatcacttccaagatttttg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9308921 acacttggaggaatttcttcaagcttgctctctcactcaaaaccctgcacttctgtttttcgacatctcttccttcgtagaatcacttccaagatttttg 9309020  T
Q  398 ttaaaggtacatattga-ttttttgattgtcttcagatttgaatt 441  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||    
T  9309021 ttaaaggtacatattgattttttttattgtcttcagatttgaatt 9309065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 36430256 - 36430162
Alignment:
Q  159 caacaaaatcgcaaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  36430256 caacaaaatcgcaaatcgcaaacctgaacaa-gagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 36430162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 27221689 - 27221606
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||    
T  27221689 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaa 27221606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 37921781 - 37921864
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||||||||||  |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  37921781 aaatcgcaaacctgaacgaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 37921864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 46278894 - 46278786
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaa------gcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagattag 264  Q
    |||||||||||||||| ||||||||||||      ||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||| ||    
T  46278894 aaatcgcaaacctgaacaaagagaatgaacaagaagcaagaaacggcaacaccaaaatcgcaaatcgcaagcatgaagagaagtaagtaaaaaagataag 46278795  T
Q  265 attcagatt 273  Q
    |||||||||    
T  46278794 attcagatt 46278786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 35127000 - 35127075
Alignment:
Q  179 aacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  35127000 aacctgaagaaagagagtgaagcaagaaacggcaacaccagaatggcaaatcgcaagcaggaagagaagtaagtaa 35127075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 2545290 - 2545215
Alignment:
Q  179 aacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  2545290 aacctgaacaaagagagtgaagcaagaaacggcaacacaagaatcgcaaatctcaagcaggaagagaagtaagtaa 2545215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35126134 - 35126209
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  35126134 caaagttctaacatcaaagtcccaattttttctctaaagtttcatctagtatttgttacctaaatactcaaattaa 35126209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36432007 - 36431932
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  36432007 caaagttctaacatcaaagtcccaattttttctctaaagtttcatctagtatttcttacctatatactcaatttaa 36431932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37920861 - 37920936
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| | | || |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  37920861 caaagttctaacatcaaagttccaattttttctctaaagtttcatctagtatttgttacctaaatactcaaattaa 37920936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 9291986 - 9291952
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcct 285  Q
    ||||||||||||||||||||||| |||||||||||    
T  9291986 gtaaaaaagattagattcagatttcttcttctcct 9291952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 2643469 - 2643589
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagattagattcag 270  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2643469 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagataagattcag 2643568  T
Q  271 attccttcttctcctattctt 291  Q
    ||||||||| ||||| |||||    
T  2643569 attccttctcctcctgttctt 2643589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 11016325 - 11016235
Alignment:
Q  164 aaatcgcaaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  11016325 aaatcgcaaatcgcaaacctgaacaaagagaatgaagcaagaaacagcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 11016235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11017373 - 11017298
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  11017373 caaagttctaacatcaaagtcccaattttttctctaaaatttcatctagtatttgttacctaaatactcaaattaa 11017298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2642628 - 2642703
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  2642628 caaagttctaacatcaaagtcctaattttttctctaaagtttcatctagtatttgttacctaaatactcaaattaa 2642703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2315683 - 2315760
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctct--aaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||||||||  ||| ||||||||||||||| |||||||||||||||| ||||    
T  2315683 caaagttctaacatcaaagtcccaattttttctctctaaagtttcatctagtatttgttacctaaatactcaaattaa 2315760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 14434758 - 14434817
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaattactatt 137  Q
    ||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||| ||||    
T  14434758 taataaataaatatatgaataaataaataaaccatct-aaaagtaattattaattattatt 14434817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 14434615 - 14434681
Alignment:
Q  9 taacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||  || |||| ||||||||||||||||| ||||| |||||| ||||||||| ||||    
T  14434615 taacatcaaaatctcaatttttcctctaaaatttcatctaatatttgttacct-aatactcaaattaa 14434681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 14435282 - 14435323
Alignment:
Q  201 caagaaacggtaacacgagaatcgcaaatcgcaagcaggaag 242  Q
    |||||||||| ||||| |||||||||||||| ||||||||||    
T  14435282 caagaaacggcaacaccagaatcgcaaatcggaagcaggaag 14435323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 25536977 - 25536848
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaa-------gcaggaagagaagtaagtaaaaaagatta 263  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||       ||||||||||||||||||||||||||| |    
T  25536977 aaatcgcaaagctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagataa 25536878  T
Q  264 gattcagattccttcttctcctattcttat 293  Q
    |||||||||||||||||||||| |||||||    
T  25536877 gattcagattccttcttctcctgttcttat 25536848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 25516641 - 25516769
Alignment:
Q  172 aatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatc-------gcaaatcgcaagcaggaagagaagtaagtaaaaaagattag 264  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||       |||||||||||||||||||||||||||||||||||||| ||    
T  25516641 aatcgcaaagctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagataag 25516740  T
Q  265 attcagattccttcttctcctattcttat 293  Q
    ||||||||||||||||||||| |||||||    
T  25516741 attcagattccttcttctcctgttcttat 25516769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 2035212 - 2035303
Alignment:
Q  159 caacaaaatcgcaaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||||||||||||||||||| ||    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  2035212 caacaaaatcgcaaatcgcaaacctgaagagag----tgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 2035303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 50063981 - 50063910
Alignment:
Q  220 aatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagattagattcagattccttcttctcctattctt 291  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  50063981 aatcgcaaatcgcaagcaggaagagaagtaagtaaaaaagataagattcagattccttcttctcctgttctt 50063910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 28071217 - 28071293
Alignment:
Q  178 aaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  28071217 aaacctgaacaaatagaatgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 28071293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25516395 - 25516470
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  25516395 caaagttctaacatcaaagtcccaattttttctctaaagtttcatctagtatttgttacctaaatactcaaattaa 25516470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50064948 - 50064873
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||  || |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  50064948 caaagttctaacatcaaagtctcaattttttctctaaagtttcatctagtatttgttacctaaatactcaaattaa 50064873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 28071028 - 28071088
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaattactatta 138  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||    
T  28071028 taataaataaatatatgaataaacaaataaaccatct-aaaagtaattattaattattatta 28071088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 50064123 - 50064070
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaatt 131  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  50064123 taataaataaatatatgaataaacaaataaaccatct-aaaagtaattattaatt 50064070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 2033984 - 2034033
Alignment:
Q  27 tttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  2033984 tttttctctaaagtttcatctagtatttgttacctaaatactcaaattaa 2034033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 25537291 - 25537215
Alignment:
Q  1 caaagttctaacatcaaaatccaaaattttt-ctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || ||||| || |||| ||||||||||||||| ||| |||||||||||| ||||    
T  25537291 caaagttctaacatcaaagtcccaatttttttctttaaagtttcatctagtatttgttatctaaatactcaaattaa 25537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 2035313 - 2035353
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcctattctt 291  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  2035313 gtaaaaaagataagattcagattccttcttctcctgttctt 2035353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 2035114 - 2035168
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaatta 132  Q
    ||||||||||||||||||||| ||||| ||| ||||| ||||||||| ||||||||    
T  2035114 taataaataaatatatgaataaacaaataaatcatct-aaaagtaataattaatta 2035168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 28071305 - 28071343
Alignment:
Q  253 aaaaaagattagattcagattccttcttctcctattctt 291  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  28071305 aaaaaagataagattcagattccttcttctcctgttctt 28071343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 990102 - 990192
Alignment:
Q  164 aaatcgcaaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  990102 aaatcgcaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 990192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 13958635 - 13958552
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  13958635 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 13958552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13958977 - 13958902
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||| ||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  13958977 caaaattctaacatcaaagtcccaattttttctctaaaatttcatctagtatttgttacctaaatactcaaattaa 13958902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 11676609 - 11676552
Alignment:
Q  197 gaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  11676609 gaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 11676552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 11668307 - 11668250
Alignment:
Q  197 gaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  11668307 gaagcaagaaacggcaacaccagaatcgcaagtcgcaagcaggaagagaagtaagtaa 11668250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7838980 - 7839056
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttt-tctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||| |||||||||||||||||||| ||| |||||||||||||||| ||||    
T  7838980 caaagttctaacatcaaagtcccaatttttttctctaaaatttcatctagtttttgttacctaaatactcaaattaa 7839056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 989440 - 989515
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || |||| ||||||| ||||||| ||||||| |||||||||||||||| ||||    
T  989440 caaagttctaacatcaaagtcccaatttttgctctaaagtttcatccagtatttgttacctaaatactcaaattaa 989515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 33881119 - 33881057
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaattactattatt 140  Q
    ||||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||    
T  33881119 taatatataaatatatgaataaacaaataaaccatct-aaaagtaattattaattattattatt 33881057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 29669139 - 29669086
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaatt 131  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  29669139 taataaataaatatatgaataaacaaataaaccatct-aaaagtaattattaatt 29669086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 7839829 - 7839881
Alignment:
Q  202 aagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||    
T  7839829 aagaaacggcaacaccagagtcgcaaatcgcaagcaggaacagaagtaagtaa 7839881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 29668975 - 29668941
Alignment:
Q  220 aatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    |||||||||||||||||||||||||||||||||||    
T  29668975 aatcgcaaatcgcaagcaggaagagaagtaagtaa 29668941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 7839891 - 7839931
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcctattctt 291  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  7839891 gtaaaaaagataagattcagattccttcttctcctgttctt 7839931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 11676542 - 11676502
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcctattctt 291  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  11676542 gtaaaaaagataagattcagattccttcttctcctgttctt 11676502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 30735816 - 30735850
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcct 285  Q
    ||||||||||| |||||||||||||||||||||||    
T  30735816 gtaaaaaagataagattcagattccttcttctcct 30735850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 33881241 - 33881195
Alignment:
Q  30 ttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    ||||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  33881241 ttctctaaaatttcatctaatatttgttatctaaatactcaaattaa 33881195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 3185831 - 3185913
Alignment:
Q  172 aatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3185831 aatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 3185913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 9673 - 9756
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||||||| || ||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  9673 aaatcgcaaaccttaacaaagagagtgaagcaagaaacggcaacaccagaatcacaaatcgcaagcaggaagagaagtaagtaa 9756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 12399 - 12482
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||||||| || ||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  12399 aaatcgcaaaccttaacaaagagagtgaagcaagaaacggcaacaccagaatcacaaatcgcaagcaggaagagaagtaagtaa 12482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11872 - 11947
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||||||| || |||||||||||| ||||||||||||| | |||||||||||||||| ||||    
T  11872 caaagttctaacatcaaaatcccaattttttctctaaactttcatctagtatctgttacctaaatactcaaattaa 11947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30639286 - 30639361
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||| || ||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  30639286 caaagttctaacatcaaagtcccaactttttctctaaaacttcatctagtatttgttacctaaatactcaaattaa 30639361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 30641461 - 30641513
Alignment:
Q  202 aagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 254  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  30641461 aagaaacggcaacaccagaatcggaaatcgcaagcaggaagagaagtaagtaa 30641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3185541 - 3185615
Alignment:
Q  1 caaagttctaacatcaaaatccaaaatttttctctaaaatttcatctagtatttattacctaaatactcaatttaa 76  Q
    |||||||||||||||||| ||  || |||||||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  3185541 caaagttctaacatcaaagtctcaa-tttttctctaaaatttcatctaatatttgttatctaaatactcaaattaa 3185615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 3185694 - 3185748
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaatta 132  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||    
T  3185694 taataaataaatatatgaataaacaaataaaccatct-aaaactaattattaatta 3185748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 12187 - 12241
Alignment:
Q  76 ataataaataaatatatgaatatacaaacaaaccatctaaaaagtaattattaatta 132  Q
    |||||||||||||||||||||| ||||| ||| |||||||||  |||||||||||||    
T  12187 ataataaataaatatatgaataaacaaataaaacatctaaaa--taattattaatta 12241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 30639539 - 30639579
Alignment:
Q  77 taataaataaatatatgaatatacaaacaaaccatctaaaa 117  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  30639539 taataaataaatatatgaataaacaaataaaccatctaaaa 30639579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 9766 - 9806
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcctattctt 291  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  9766 gtaaaaaagataagattcatattccttcttctcctgttctt 9806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 12492 - 12532
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcctattctt 291  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  12492 gtaaaaaagataagattcatattccttcttctcctgttctt 12532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 23552376 - 23552455
Alignment:
Q  172 aatcgcaaacctgaagaaagagaatgaagcaagaaacggtaacacgagaatcgcaaatcgcaagcaggaagagaagtaag 251  Q
    ||||||||||||||| ||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  23552376 aatcgcaaacctgaacaaagagagtgaagcaagaaagggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaag 23552455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 35754267 - 35754225
Alignment:
Q  251 gtaaaaaagattagattcagattccttcttctcctattcttat 293  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  35754267 gtaaaaaagataagattcagattccttcttctcctgttcttat 35754225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 251
Target Start/End: Complemental strand, 8082066 - 8082035
Alignment:
Q  220 aatcgcaaatcgcaagcaggaagagaagtaag 251  Q
    ||||||||||||||||||||||||||||||||    
T  8082066 aatcgcaaatcgcaagcaggaagagaagtaag 8082035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 35754329 - 35754296
Alignment:
Q  171 aaatcgcaaacctgaagaaagagaatgaagcaag 204  Q
    |||||||||||||||| |||||||||||||||||    
T  35754329 aaatcgcaaacctgaacaaagagaatgaagcaag 35754296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University