View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12035_low_4 (Length: 408)
Name: NF12035_low_4
Description: NF12035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12035_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 152 - 400
Target Start/End: Complemental strand, 10847573 - 10847325
Alignment:
| Q |
152 |
taatacagtcttgatgtgaggttgtgtgtccaggaaacatttctctaaaaattaatgcccaacctcactttgttcattcttatgtgtaaacattaacata |
251 |
Q |
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| T |
10847573 |
taatacagtcttgatgtgaagttgtgtgtccaagaaacatttctctaaaaattaatacccaacctcactttgttcattcttatgtgtaaacattaacata |
10847474 |
T |
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| Q |
252 |
ttagtgcccatgttaaaagcttaatttcttatgtgtttttccagcttcaactaggatgctatatagaacatttccattaatgggcttttttcttaatatt |
351 |
Q |
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| T |
10847473 |
ttagttcccatgttaaaagcttaatttcttatgtgtttttccagcttcaactaggatgctatatagaacatttccattaatggatttttttcttaatatt |
10847374 |
T |
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| Q |
352 |
ctcccaatcagaattttctctgccaactccaagatgtcttcttctcatt |
400 |
Q |
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| T |
10847373 |
ctcccaatcagaattttctctgccaactctaagatgtcttcttttcatt |
10847325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10847724 - 10847608
Alignment:
| Q |
1 |
agacagtagtgattaaaaattatagctatgttatttaaacatacaaaaaccaacaccgtatccgacaccatataaaatgcacatcgaataagtgttgatg |
100 |
Q |
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| T |
10847724 |
agacagtagttattaaaaattatagctatgttatttaaacatacaaaaaccaacaccgtatccgacaccatataaaatgcacatcgaataagtgttgatg |
10847625 |
T |
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| Q |
101 |
ttggatctgaggagagg |
117 |
Q |
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| T |
10847624 |
ttggacctgaggagagg |
10847608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 396
Target Start/End: Complemental strand, 10878335 - 10878122
Alignment:
| Q |
190 |
atttctctaaaaattaatgcccaacctcac-tttgttcattcttatgtgtaaacat--taacatattagtgcccatgttaaaagcttaatttcttatgtg |
286 |
Q |
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| T |
10878335 |
atttctctaaaaattaatacccaaccttacttttgttcattcttatatgtaaacatgagaacatattagcgcccttgttaaaaggttcatctctaatgtg |
10878236 |
T |
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| Q |
287 |
---tttttccagcttcaactaggatgctatatagaacatttccattaatgggctttttt-cttaatattctcccaatcagaattttctctgccaactcca |
382 |
Q |
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| T |
10878235 |
tttttttttctgcctagactcggatactatataaaacatttcaactaatggccttttttccttaaaattaccccaacaaaaattttcactgccaactcca |
10878136 |
T |
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| Q |
383 |
agatgtcttcttct |
396 |
Q |
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| T |
10878135 |
aggcgtcttcttct |
10878122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 10878430 - 10878384
Alignment:
| Q |
59 |
tatccgacaccatataaaatgcacatcgaataagtgttgatgttgga |
105 |
Q |
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| T |
10878430 |
tatccgacaccctataaaatgaacatggaataagtgttgacgttgga |
10878384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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