View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12036_high_3 (Length: 237)

Name: NF12036_high_3
Description: NF12036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12036_high_3
NF12036_high_3
[»] chr1 (2 HSPs)
chr1 (98-237)||(50465828-50465967)
chr1 (1-65)||(50466041-50466105)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 50465967 - 50465828
Alignment:
Q  98 tcaacaaattgaaattcatcaacttaatttaaagtcaactcgattcattccaacaaaagtaagcacaagggccttatcgagagaattggtcaactttggg 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50465967 tcaagaaattgaaattcatcaacttaatttaaagtcaactcgattcattccaacaaaagtaagcacaagggccttatcgagaggattggtcaactttggg 50465868  T
Q  198 aaatggatatattgatgatcataaattgagaaacaatgca 237  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50465867 aaatggatatattgatgatcataaattgagaaacaatgca 50465828  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 50466105 - 50466041
Alignment:
Q  1 cctgtacctcaaaccacaacccaaatttgtgtgcattttgcacataaaattagaactactaaacc 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466105 cctgtacctcaaaccacaacccaaatttgtgtgcattttgcacataaaattagaactactaaacc 50466041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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