View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12036_low_1 (Length: 582)
Name: NF12036_low_1
Description: NF12036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12036_low_1 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0076 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 55 - 582
Target Start/End: Complemental strand, 48005 - 47477
Alignment:
| Q |
55 |
atttcactaataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgta |
154 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48005 |
atttcattgataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgta |
47906 |
T |
|
| Q |
155 |
gtagtagtaatagaatcaaggatgaaagtccaatctattgtctctagaatattaattatcactctatcacagtgcatatattgcataaacgacgga-aaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
47905 |
gtagtagtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatatatcgcataaacgacgaacaaa |
47806 |
T |
|
| Q |
254 |
aagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacagagttagaaaggtaccacctgacacgatatcctg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47805 |
aagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacagagttagaaaggtaccacctgacacgatatcatg |
47706 |
T |
|
| Q |
354 |
acttctgcgattttttggtggtcatacgtctaggccgcctatattcctcggcggtggtgttggcgaagttcggaatattgccttagcttcttctgcatat |
453 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47705 |
acttctgtgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcggaatattgccttagcttcttctgcatat |
47606 |
T |
|
| Q |
454 |
gtgtgcatgttgtctatgtaagttgttagttatcatccatattaccaaaaaatattatccatagtatgtggacacccaaaaattgttcattaacccaccg |
553 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47605 |
gtgtgcatgctgtctatgtaagttgttagttatcatccatattatcaaaaaatattatctatagtatgtggacacccaaaaattgttcattaacccaccg |
47506 |
T |
|
| Q |
554 |
aaactttattcattcaatgataattggaa |
582 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47505 |
aaactttattcattcaatgataattggaa |
47477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Original strand, 20133824 - 20134269
Alignment:
| Q |
14 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactaataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20133824 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactgataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttga |
20133923 |
T |
|
| Q |
114 |
ggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta---atagaatcaaggatgaaagtccaatctattgtctctagaatattaat |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20133924 |
ggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagtaatagaatcaaggatgaaagtccaatct-------ctagaatattaat |
20134016 |
T |
|
| Q |
211 |
tatcactctatcacagtgcatatattgcataaacgacgga-aaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacg |
309 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
20134017 |
tatcactctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccaattcggtttaacaaaaggatccacg |
20134116 |
T |
|
| Q |
310 |
gagaataacagagttagaaaggtaccacctgacacgatatcctgacttctgcgattttttggtggtcatacgtctaggccgcctatattcctcggcggtg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20134117 |
gagaataacagagttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcg |
20134216 |
T |
|
| Q |
410 |
gtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatg |
462 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
20134217 |
gtgttggcgaagttcggaatattgccttggcttcttccgcatatgtgtgcatg |
20134269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 14674726 - 14674569
Alignment:
| Q |
55 |
atttcactaataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgta |
154 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
14674726 |
atttcacttataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgt- |
14674628 |
T |
|
| Q |
155 |
gtagtagtaatagaatcaaggatgaaagtccaatctattgtctctagaatattaattatca |
215 |
Q |
| |
|
|||| |||| ||||| ||||||| |||||| |||||||||| | ||||| |||||||| |
|
|
| T |
14674627 |
--agtattaatgaaatcagggatgaatgtccaacctattgtctccaaaatatcaattatca |
14674569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 31710347 - 31710199
Alignment:
| Q |
64 |
ataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta |
163 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
31710347 |
ataaccgagctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgt---agtatta |
31710251 |
T |
|
| Q |
164 |
atagaatcaaggatgaaagtccaatctattgtctctagaatattaattatca |
215 |
Q |
| |
|
|| ||||| ||||||| |||||| |||||||||| | ||||| |||||||| |
|
|
| T |
31710250 |
atgaaatcagggatgaaggtccaacctattgtctccaaaatatcaattatca |
31710199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 18974485 - 18974406
Alignment:
| Q |
136 |
gtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctctagaatattaattatca |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
18974485 |
gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca |
18974406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 1830 - 1865
Alignment:
| Q |
14 |
caaaggcaactaaattcataaagtgaaatcgaaagc |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1830 |
caaaggcaactaaattcataaagtgaaatcgaaagc |
1865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 44358247 - 44357802
Alignment:
| Q |
14 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactaataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44358247 |
caaaggcaactaaattcataaagtgaaatcgaaagccatacatttcactgataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttga |
44358148 |
T |
|
| Q |
114 |
ggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta---atagaatcaaggatgaaagtccaatctattgtctctagaatattaat |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44358147 |
ggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagtaatagaatcaaggatgaaagtccaatct-------ctagaatattaat |
44358055 |
T |
|
| Q |
211 |
tatcactctatcacagtgcatatattgcataaacgacgga-aaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacg |
309 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
44358054 |
tatcactctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccaattcggtttaacaaaaggatccacg |
44357955 |
T |
|
| Q |
310 |
gagaataacagagttagaaaggtaccacctgacacgatatcctgacttctgcgattttttggtggtcatacgtctaggccgcctatattcctcggcggtg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44357954 |
gagaataacagagttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcg |
44357855 |
T |
|
| Q |
410 |
gtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatg |
462 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
44357854 |
gtgttggcgaagttcggaatattgccttggcttcttccgcatatgtgtgcatg |
44357802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 5331387 - 5331449
Alignment:
| Q |
136 |
gtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctc |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5331387 |
gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctc |
5331449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 251 - 546
Target Start/End: Complemental strand, 12325623 - 12325335
Alignment:
| Q |
251 |
aaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacagagttagaaaggtaccacctgacacgatatc |
350 |
Q |
| |
|
||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325623 |
aaaaagtattgtaat----gaaaactaatggccgactcggtttaacaaaaggatcaacggagaataacagagttagaaaggtaccacctgacacgatatc |
12325528 |
T |
|
| Q |
351 |
ctgacttctgcgattttttggtggtcatacgtctaggccgcctatattcctcggcggtggtgttggcgaagttcggaatattgccttagcttcttctgca |
450 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12325527 |
atgacttctgcgatgtttaggtggtcatacgtctaggctgcctatcttcctcggcggtg---ttggcgaagttcggaatattgccttagctgcttctgca |
12325431 |
T |
|
| Q |
451 |
tatgtgtgcatgttgtctatgtaagttgttagttatcatccatattaccaaaaaatattatccatagtatgtggacacccaaaaattgttcattaa |
546 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12325430 |
tatgtgtgcatgctgtctatgtaagttgttagttatcatccatattaccaaaaaatattatctatagtatgtggacacccaaaaattgttcattaa |
12325335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 64 - 235
Target Start/End: Complemental strand, 12325890 - 12325719
Alignment:
| Q |
64 |
ataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta |
163 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325890 |
ataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta |
12325791 |
T |
|
| Q |
164 |
atagaatcaaggatgaaagtccaatctattgtctctagaatattaattatcactctatcacagtgcatatat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12325790 |
atagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcaccctatcacagtgcatatat |
12325719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 11203611 - 11203439
Alignment:
| Q |
44 |
gaaagccatacatttcactaat---aaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtaca |
140 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11203611 |
gaaagccatacatttcactgatgataaccgggttgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtaca |
11203512 |
T |
|
| Q |
141 |
atacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctctagaatattaattatcac |
216 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
11203511 |
atacctttgctgtagt---agtaatgaaatcaaggatgaaagtccaatctattgtctccagaatagtaattatcac |
11203439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 4281541 - 4281689
Alignment:
| Q |
64 |
ataaccgagttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta |
163 |
Q |
| |
|
||||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| || |
|
|
| T |
4281541 |
ataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgct---gtagtatta |
4281637 |
T |
|
| Q |
164 |
atagaatcaaggatgaaagtccaatctattgtctctagaatattaattatca |
215 |
Q |
| |
|
|| ||||| ||||||| |||||| |||||||||| | ||||| ||||||| |
|
|
| T |
4281638 |
atgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatca |
4281689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 17594840 - 17594762
Alignment:
| Q |
74 |
tgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctg |
152 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
17594840 |
tgatggagatgagaaattgagttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttgctg |
17594762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 19807200 - 19807279
Alignment:
| Q |
136 |
gtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctctagaatattaattatca |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
19807200 |
gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca |
19807279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 8165959 - 8165833
Alignment:
| Q |
83 |
tgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagtaatagaatcaaggatgaaag |
182 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||| || ||| |||| ||||||| ||||| | |
|
|
| T |
8165959 |
tgagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgccctt------gtggtattaatgaaatcaagaatgaagg |
8165866 |
T |
|
| Q |
183 |
tccaatctattgtctctagaatattaattatca |
215 |
Q |
| |
|
||||| |||||||||| | ||||| |||||||| |
|
|
| T |
8165865 |
tccaacctattgtctccaaaatatcaattatca |
8165833 |
T |
|
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Target: scaffold0208 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 351 - 383
Alignment:
| Q |
83 |
tgagaaattgagttcgtttgttgaatcttgagg |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
351 |
tgagaaattgagtttgtttgttgaatcttgagg |
383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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