View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12036_low_2 (Length: 284)
Name: NF12036_low_2
Description: NF12036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12036_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 51 - 266
Target Start/End: Complemental strand, 34361131 - 34360917
Alignment:
| Q |
51 |
tattatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgctagcatcttgaacagaactaagtaaacatgcattgtatacataga |
150 |
Q |
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| T |
34361131 |
tattatccctataagatgcagcagaagttggacttttaaaagcctcagtccatgctagcatcttgaacagagctaagtaaacatgcattgtatacataga |
34361032 |
T |
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| Q |
151 |
gataggaaaagagaagagttgcaacttctcagtttcaaactatnnnnnnnggatccgttgaaatgaagtacttcattcataaaagtaagatgctcaagcc |
250 |
Q |
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| T |
34361031 |
gataggaaaagggaagagttgcaacttctcactttcaaactat-aaaaaaggatccaatgaaatgaagtacttcattcataaaagtaagatgctcaagcc |
34360933 |
T |
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| Q |
251 |
tccatactaaaataat |
266 |
Q |
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|||||||||||||||| |
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| T |
34360932 |
tccatactaaaataat |
34360917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 25291753 - 25291656
Alignment:
| Q |
54 |
tatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgctagcatcttgaacagaactaagtaaacatgcattgtatacatagag |
151 |
Q |
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| T |
25291753 |
tatccctataagatgcagcaaaagttggacttctaaaagccttagttcatgctaacatcttcaacagaacaaagtaaagatacatcgcatacatagag |
25291656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 31807861 - 31807808
Alignment:
| Q |
54 |
tatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgcta |
107 |
Q |
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| T |
31807861 |
tatccctataagatgcagcaaaagttgaacttctaaaagccttagtccatgcta |
31807808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 5584814 - 5584707
Alignment:
| Q |
154 |
aggaaaagagaagagttgcaacttctcagtttcaaactatnnnnnnnggatccgttgaaatgaagtacttcattcataaaagtaagatgctcaagcctcc |
253 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| || || || ||||| ||||||||| ||||||||||||||||||||| | |
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| T |
5584814 |
aggaaaggagaagagttgcaacttctcactttcaaactataaaaaaaggtacc-----aaggaagtgcttcattcacaaaagtaagatgctcaagccttc |
5584720 |
T |
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| Q |
254 |
atactaaaataat |
266 |
Q |
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| T |
5584719 |
atactaaaataat |
5584707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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