View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12037_high_13 (Length: 366)

Name: NF12037_high_13
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12037_high_13
NF12037_high_13
[»] chr6 (3 HSPs)
chr6 (246-338)||(22854511-22854603)
chr6 (219-338)||(18108759-18108880)
chr6 (1-109)||(18108506-18108611)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 22854511 - 22854603
Alignment:
Q  246 aacctttataccaccnnnnnnntataatttcaagctgcaaccaccgcaatacctatcacaataacagtggccgcaacctcagccacaatatat 338  Q
    |||||||||||||||       |||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22854511 aacctttataccaccaaaaaaatataatttcatgctataaccaccgcaatacctatcacaataatagtggccgcaacctcagccacaatatat 22854603  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 18108759 - 18108880
Alignment:
Q  219 tgaagcagtgacataatagaaataagtaacctttataccaccnnnnnnntata--atttcaagctgcaaccaccgcaatacctatcacaataacagtggc 316  Q
    |||||||||||||||||| ||||| | ||||||||||||| |       ||||  |||||| |||  |||||||||||||||||||||||||| ||||||    
T  18108759 tgaagcagtgacataatataaatatgcaacctttataccaacaaaaaaatatataatttcatgctataaccaccgcaatacctatcacaataatagtggc 18108858  T
Q  317 cgcaacctcagccacaatatat 338  Q
    || |||||||||||||||||||    
T  18108859 cggaacctcagccacaatatat 18108880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18108506 - 18108611
Alignment:
Q  1 aatgatcagcatctcatccactagccaatcctcggatcaaaggtcaataccaacaacattaattaatcatcagtaaaattatctttcaagtcaacttaca 100  Q
    |||||||| || ||||||||||| |||||| | |||||||||||||||  || | || |    || ||| ||||||||| ||||||||||| ||||||||    
T  18108506 aatgatcaacaactcatccactatccaatcattggatcaaaggtcaatgtcatctacttc---tagtcaacagtaaaatcatctttcaagtaaacttaca 18108602  T
Q  101 agaatcaat 109  Q
    |||||||||    
T  18108603 agaatcaat 18108611  T

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