View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12037_high_14 (Length: 363)
Name: NF12037_high_14
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12037_high_14 |
 | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 21810992 - 21810659
Alignment:
| Q |
4 |
tataatacatgggttggcaacacagtcccacgacaaatggacataggaacaatttgtccccttgccgttgaagctgatatagcgcgactaaggacctcct |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
21810992 |
tataatacatgggttggcaacacagtcccacgacaaacagacataggaacaattcgtccccttgctgctgaagctgatatagcgcgactaaggacctcct |
21810893 |
T |
|
| Q |
104 |
ctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaatagacaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21810892 |
ctgctagacaaaataaaaggggagatagaggatccccttgacacaccccacgggagcaagaaaaaaaaccaactgcctttccattcaccaaaatagacaa |
21810793 |
T |
|
| Q |
204 |
gcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtca |
303 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21810792 |
gcgtgcagattgtaaaatagcaagaatccaattaatgaaaataggggagaaaccaaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtca |
21810693 |
T |
|
| Q |
304 |
aaagccatggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
21810692 |
aaagccttggaaatgtcgaccttgagagcgatat |
21810659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 337
Target Start/End: Original strand, 41346203 - 41346428
Alignment:
| Q |
112 |
caaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaatagacaagcgtgcag |
211 |
Q |
| |
|
||||||||||| || || || || || |||||||||||||||||||||| || || || ||||| ||||| ||||||||||| | || |||| |
|
|
| T |
41346203 |
caaaataaaagtggggaaagtgggtcgccttgacgcaccccacgggagcgagagaaaaaaccgaccgccttgccattaaccaaaatagatagacgagcag |
41346302 |
T |
|
| Q |
212 |
attgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtcaaaagccat |
311 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
41346303 |
attgtaaaatagcaaggatacaattgataaaagtagtggagaaaccgaaattgtgcagcaccataatcaaaaaattccaatctaaagtgtcaaaagcctt |
41346402 |
T |
|
| Q |
312 |
ggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
||| ||||| ||||| ||||| |||| |
|
|
| T |
41346403 |
ggatatgtcaaccttaagagcaatat |
41346428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 326
Target Start/End: Complemental strand, 21462547 - 21462307
Alignment:
| Q |
90 |
actaaggacctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattc |
189 |
Q |
| |
|
|||||| ||||||| ||| || |||||||| || || || ||||||||||| || || |||||||||||||||| ||||| || || ||||| |
|
|
| T |
21462547 |
actaagaacctcctatgcaaggcaaaataatagaggggaaagaggatccccctgccgaaccccacgggagcaagagaaaaagccaaccgcgttaccatta |
21462448 |
T |
|
| Q |
190 |
accaaaatagacaagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcag--caccatg--atcaaaaaa |
285 |
Q |
| |
|
| |||||||| || || |||||||||||||||||||| | | || |||||| ||| |||||||||||| |||| || || || | |||| ||| |
|
|
| T |
21462447 |
attaaaatagataaacgaacagattgtaaaatagcaagaatctagttgatgaaagtagcggagaaaccgaagttattaagtacaacaagcaatcagaaag |
21462348 |
T |
|
| Q |
286 |
ttccaatctaaagtgtcaaaagccatggaaatgtcgacctt |
326 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
21462347 |
ttccaatctaaagtgtcaaaagctttggagatgtcaacctt |
21462307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 1926903 - 1927236
Alignment:
| Q |
4 |
tataatacatgggttggcaacacagtcccacgacaaatggacataggaacaatttgtccccttgccgttgaagctgatatagcgcgactaaggacctcct |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
1926903 |
tataatacatgggttggcaacacagtcccacgacaaacggacataggaacaattcgaccccttgctgctgaagctgagatagcgcgactaaggacctcct |
1927002 |
T |
|
| Q |
104 |
ctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaatagacaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
1927003 |
ctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacaggagcaagaaaaaaatccaactgcctttccattcaccaaattagacaa |
1927102 |
T |
|
| Q |
204 |
gcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtca |
303 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1927103 |
gcgtgcagattgtaaaatagcaagaatccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtca |
1927202 |
T |
|
| Q |
304 |
aaagccatggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
1927203 |
aaagccttggaaatgtcgaccttgagagcgatat |
1927236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 21817 - 22150
Alignment:
| Q |
4 |
tataatacatgggttggcaacacagtcccacgacaaatggacataggaacaatttgtccccttgccgttgaagctgatatagcgcgactaaggacctcct |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
21817 |
tataatacatgggttggcaacacagtcccacgacaaacagacataggaacaattcgaccccttgctgctgaagctgaaatagcgcgactaaggacctcct |
21916 |
T |
|
| Q |
104 |
ctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaatagacaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21917 |
ctgctagacaaaataaaaggggagatagaggatccccttgacacaccccacaggagcaagaaaaaaaaccaactgcctttccattcaccaaaatagacaa |
22016 |
T |
|
| Q |
204 |
gcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtca |
303 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22017 |
gcgtgcagattgtaaaatagcaagaatccaattaatgaaaataggggagaaaccaaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtca |
22116 |
T |
|
| Q |
304 |
aaagccatggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
22117 |
aaagccttggaaatgtcgaccttgagagcgatat |
22150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 21880093 - 21880427
Alignment:
| Q |
1 |
gcgtataatacatgggttggcaacacagtcccacgacaaatggacataggaacaatttgtccccttgccgttgaagctgatatagcgcgactaaggacct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
21880093 |
gcgtataatacatgggttagcaacacagtcccacgacaaacggacataggaacaattcgtccccttgctgctgaagctgatatagcacgactaaggacct |
21880192 |
T |
|
| Q |
101 |
cctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaataga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
21880193 |
cctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccataggagcaagaaaaaaaac-aactgcctttccattcaccaaaataga |
21880291 |
T |
|
| Q |
201 |
caagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtg |
300 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21880292 |
caagcgtacagattgtaaaatagcaaga-accaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtg |
21880390 |
T |
|
| Q |
301 |
tcaaaagccatggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21880391 |
tcaaaagccttggaaatgtcgaccttgagagcgatat |
21880427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 57948 - 58284
Alignment:
| Q |
1 |
gcgtataatacatgggttggcaacacagtcccacgacaaatggacataggaacaatttgtccccttgccgttgaagctgatatagcgcgactaaggacct |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
57948 |
gcgtataatacatgggttggaaccacagtcccacgacaaacagacataggaacaattcatccccttgctgctgaagctgatatagcgcgactaaggacct |
58047 |
T |
|
| Q |
101 |
cctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaataga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | ||||||||||||||| |
|
|
| T |
58048 |
cctctgctagacaaaataaaaggggagatagaggatccccttgacacaccccacgggagcaagaaaaaaaaccaacagccttacaattcaccaaaataga |
58147 |
T |
|
| Q |
201 |
caagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58148 |
caagcgtgcagattgtaaaatagcaagaatccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtg |
58247 |
T |
|
| Q |
301 |
tcaaaagccatggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
58248 |
tcaaaagccttggagatgtcgaccttgagagagatat |
58284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 61 - 332
Target Start/End: Complemental strand, 13797 - 13528
Alignment:
| Q |
61 |
ccccttgccgttgaagctgatatagcgcgactaaggacctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagc |
160 |
Q |
| |
|
||||| || |||||||| || | ||| ||||| | |||||||||||| |||||||| ||||| ||||||||||| || |||||| |||| ||||| |||| |
|
|
| T |
13797 |
cccctagctgttgaagccgagagagctcgactgaagacctcctctgcgagacaaaacaaaagaggagatagagggtctccttgatgcacaccacgagagc |
13698 |
T |
|
| Q |
161 |
aagnnnnnnnnccaactgcctttccattcaccaaaatagacaagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaa |
260 |
Q |
| |
|
||| || ||||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||||||||||||| || ||| |||||||| |
|
|
| T |
13697 |
aagagaaaaaacccactgcctttccattcactaaaatagacaaacgtgcagattgtaa--tggcaagaatccaattaatgaaaagagtggaaaaaccgaa |
13600 |
T |
|
| Q |
261 |
attatgcagcaccatgatcaaaaaattccaatctaaagtgtcaaaagccatggaaatgtcgaccttgagagc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| | || ||||||||||| ||||| |
|
|
| T |
13599 |
attatgcagcaccatgatcaaaaaattccaatctaacgtgtcaaatgccttcgagatgtcgacctttagagc |
13528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 130 - 329
Target Start/End: Original strand, 33236422 - 33236621
Alignment:
| Q |
130 |
agaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattcaccaaaatagacaagcgtgcagattgtaaaatagcaagag |
229 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||| ||||||||||| ||||| ||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
33236422 |
agaggatcgccttgacgcactccacgggaacaagagaaaaagccaactgccttgccattaaccaaaatagataaatgagcagattgtaaaatagcaagaa |
33236521 |
T |
|
| Q |
230 |
accaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtcaaaagccatggaaatgtcgaccttgag |
329 |
Q |
| |
|
||| || ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| || ||||| |
|
|
| T |
33236522 |
tccagttgatgaatgtaattgagaaaccgaaattatgcagcaccatgatcataaaattccaatctaaagtatcaaaagccttggaaatgtcaactttgag |
33236621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 326
Target Start/End: Original strand, 25973332 - 25973570
Alignment:
| Q |
88 |
cgactaaggacctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccat |
187 |
Q |
| |
|
||||| || ||||||||||| | |||||||||||| || || ||||| ||||| |||||||||||||||| ||||| ||||| || | |||| |
|
|
| T |
25973332 |
cgactgagaacctcctctgcaatacaaaataaaagaggggaaagaggttccccctgacgcaccccacgggtgcaagggaaataaccaaccgctgtgccat |
25973431 |
T |
|
| Q |
188 |
tcaccaaaatagacaagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaatt |
287 |
Q |
| |
|
| | |||||||| || || || ||||||||||||||||| ||| || |||||| ||| ||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
25973432 |
ttattaaaatagataaacgagccgattgtaaaatagcaaggatccagtttatgaaagtagtggagaaaccaaaattatgcagcaccatgataagaaaatc |
25973531 |
T |
|
| Q |
288 |
ccaatctaaagtgtcaaaagccatggaaatgtcgacctt |
326 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
25973532 |
ccaatctaaagtgtcaaaagctttggaaatatcgacctt |
25973570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 20384201 - 20384145
Alignment:
| Q |
270 |
caccatgatcaaaaaattccaatctaaagtgtcaaaagccatggaaatgtcgacctt |
326 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||| ||| |||||||||| ||||| |
|
|
| T |
20384201 |
caccataaccaaaaaattccaatctaatgtgtcaaaggccttggaaatgtcaacctt |
20384145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 326
Target Start/End: Original strand, 20939133 - 20939371
Alignment:
| Q |
88 |
cgactaaggacctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccat |
187 |
Q |
| |
|
||||| || ||||||||||| | |||||||||||| || || ||||||||||| |||||||||||||||| ||||| ||||| || | |||| |
|
|
| T |
20939133 |
cgactgagaacctcctctgcaatacaaaataaaagaggggaaagaggatccccctgacgcaccccacgggtgcaagggaaataaccaaccgctgtgccat |
20939232 |
T |
|
| Q |
188 |
tcaccaaaatagacaagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaatt |
287 |
Q |
| |
|
| | |||||||| || || || || |||||||||||||| ||| || |||||| ||| ||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
20939233 |
ttaataaaatagataaacgagccgaatgtaaaatagcaaggatccagtttatgaaagtagtggagaaaccaaaattatgcagcaccatgataagaaaatc |
20939332 |
T |
|
| Q |
288 |
ccaatctaaagtgtcaaaagccatggaaatgtcgacctt |
326 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
20939333 |
ccaatctaaagtgtcaaaagctttggaaatatcgacctt |
20939371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 10610649 - 10610715
Alignment:
| Q |
97 |
acctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaag |
163 |
Q |
| |
|
||||||||||| | ||||||||||| || || ||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
10610649 |
acctcctctgcaatgcaaaataaaagaggggaaagaggatccccctgacgtaccccacgggaacaag |
10610715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 337
Target Start/End: Original strand, 25852 - 26099
Alignment:
| Q |
90 |
actaaggacctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaagnnnnnnnnccaactgcctttccattc |
189 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| || || |||||||| || || || |||||| ||| ||||| ||||| || || ||||| |
|
|
| T |
25852 |
actaagaacctcctctgcaagacaaaataaaagaggggaaagaggatctccctgccgaaccccaagggtgcaagagaaaaatccaaccgcattaccatta |
25951 |
T |
|
| Q |
190 |
accaaaatagacaagcgtgcagattgtaaaatagcaagagaccaattaatgaaaataggggagaaaccgaaattatgcagcaccatgatcaaaaaattcc |
289 |
Q |
| |
|
| |||||||| || || |||||||||| |||||||||| | | || |||||| ||| ||||||||||| |||| ||||| |||| ||||||| |
|
|
| T |
25952 |
attaaaatagataaacgagcagattgtagaatagcaagaatctagttgatgaaagtagcagagaaaccgaagttattaagcacatcaatcaggaaattcc |
26051 |
T |
|
| Q |
290 |
aatctaaagtgtcaaaagccatggaaatgtcgaccttgagagcgatat |
337 |
Q |
| |
|
|||||| | |||| ||||| ||||| ||||| ||||| | |||||||| |
|
|
| T |
26052 |
aatctagaatgtcgaaagctatggagatgtcaaccttaatagcgatat |
26099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 23161890 - 23161811
Alignment:
| Q |
253 |
aaaccgaaattatgcagcaccatgatcaaaaaattccaatctaaagtgtcaaaagccatggaaatgtcgaccttgagagc |
332 |
Q |
| |
|
||||||||||| | |||||||| | || |||||||||||| |||||||| || ||| ||||||| |||||||| ||||| |
|
|
| T |
23161890 |
aaaccgaaattgttcagcaccacaaccagaaaattccaatccaaagtgtcgaacgccttggaaatatcgacctttagagc |
23161811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 14676527 - 14676600
Alignment:
| Q |
90 |
actaaggacctcctctgctagacaaaataaaaggggagatagaggatccccttgacgcaccccacgggagcaag |
163 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| || || |||||||| || || | |||||||||| ||||| |
|
|
| T |
14676527 |
actaagaacctcctctgcaagacaaaataaaagaggggaaagaggatctccctgctgaaccccacgggtgcaag |
14676600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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