View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12037_high_15 (Length: 353)
Name: NF12037_high_15
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12037_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 38908695 - 38908346
Alignment:
| Q |
1 |
gtatcaccttctactatccgtccccaaccagaaaaggcatttacttaacgaacttcgaactgtaaagatgctttcttatcttccttccttcggtctttag |
100 |
Q |
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| T |
38908695 |
gtatcaccttctactatccgtccccaaccagaaaaggcatttacataacgaacttcgaactgtaaagatgctttcttatcttccttccttcggtctttag |
38908596 |
T |
|
| Q |
101 |
agctcagtataaactgcaataattcataagaaaattatgctcgggtaaattcactagtaaacacaacaattaatcaacagtttagaaatttgacagcagc |
200 |
Q |
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| T |
38908595 |
agctcagtataaactgcaataattcataagaaaattatgctcgggtaaattcactagtaaacacaacaattaatcaacagtttagaaatttgacagcagc |
38908496 |
T |
|
| Q |
201 |
agtcgcaacactggggtaaaacagaagccacagcaaatcagacacaaacaagacatgaatttgaaagttcagtgaaaggtatgttttgacatcaatgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38908495 |
agtcgcaacactggggtaaaacagaagccacagcaaatcagacacaaacaagacatgaatttgaaagttcagtgaaaggtatgttttgacatcaatgatg |
38908396 |
T |
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| Q |
301 |
gcacaaatttctagctgtt----agatatcgtcagtattaagaataattt |
346 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
38908395 |
gcacaaatttctagctgttatgcagatatcttcagtattaagaataattt |
38908346 |
T |
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