View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12037_high_17 (Length: 340)
Name: NF12037_high_17
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12037_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 40 - 312
Target Start/End: Original strand, 28783194 - 28783466
Alignment:
| Q |
40 |
gaacctgtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtgg |
139 |
Q |
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| T |
28783194 |
gaaccggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtgg |
28783293 |
T |
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| Q |
140 |
ctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggagga |
239 |
Q |
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| T |
28783294 |
ctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggagga |
28783393 |
T |
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| Q |
240 |
agaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
312 |
Q |
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| T |
28783394 |
agaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
28783466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 28783099 - 28783278
Alignment:
| Q |
47 |
tggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtggctttgga |
146 |
Q |
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| T |
28783099 |
tggaggcttatatattggaacaggtggtagaactgggtgctcaatctttggt---ggacatggtttcttgatcgggactggtggtggaagtgcctttgga |
28783195 |
T |
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| Q |
147 |
actggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaac |
229 |
Q |
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| T |
28783196 |
accggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaac |
28783278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 28783448 - 28783532
Alignment:
| Q |
228 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
312 |
Q |
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| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtt |
28783532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 28783553 - 28783624
Alignment:
| Q |
234 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggagga |
305 |
Q |
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| T |
28783553 |
ggaggaagaggtttctcataaacaggtgtaggaggagggataggtttttcatagataggcacaggtggagga |
28783624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 28783421 - 28783499
Alignment:
| Q |
234 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
312 |
Q |
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| T |
28783421 |
ggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtt |
28783499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
| Q |
228 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg |
292 |
Q |
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| T |
28783514 |
acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg |
28783578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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