View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12037_high_20 (Length: 330)
Name: NF12037_high_20
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12037_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 11119116 - 11119404
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119116 |
ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
11119215 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119216 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
11119315 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgtgaacaagaaatcttctgaattggatcttgctagtgtggcctcagaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11119316 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaat |
11119404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 11111345 - 11111628
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11111345 |
ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg |
11111444 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11111445 |
cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct |
11111544 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgtgaacaagaaatcttctgaattggatcttgctagtgtggcctc |
313 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
11111545 |
taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctc |
11111628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 10793449 - 10793178
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgtgaacaagaaatcttctgaattggatcttgc |
301 |
Q |
| |
|
||| ||||||||||||||||| || || || ||||||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgc |
10793178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 11156597 - 11156838
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||| | |||| |
|
|
| T |
11156597 |
ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg |
11156696 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||||||||||||||||||| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||||||| ||||| |
|
|
| T |
11156697 |
cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct |
11156796 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgt |
271 |
Q |
| |
|
|| || | ||||||||| |||||||| || ||||| ||||| |
|
|
| T |
11156797 |
aacagggacgaaaggagagattagaaaacaatgcaactttgt |
11156838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 11137655 - 11137896
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | |||| |
|
|
| T |
11137655 |
ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg |
11137754 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
| ||||||||||||||||||||||| || | || |||||| |||||| | | |||| | | ||||||||||||||||||||||| ||||| |
|
|
| T |
11137755 |
ctgataccattagcattgtcaacaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgct |
11137854 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgt |
271 |
Q |
| |
|
|| || || |||||||| |||||||| || ||||||||||| |
|
|
| T |
11137855 |
gaccgggaaaaaaggagagattagaaaacattgcaattttgt |
11137896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | |||| |
|
|
| T |
11145960 |
ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg |
11146059 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttg |
159 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
11146060 |
ctgataccattagcattgtcaacaactttg |
11146089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 11149929 - 11150058
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||| |
|
|
| T |
11149929 |
ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt |
11150028 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttg |
159 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
11150029 |
cagataccattagcattgtcaacaaatttg |
11150058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
82 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
140 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University