View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12037_high_5 (Length: 486)
Name: NF12037_high_5
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12037_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 126 - 455
Target Start/End: Complemental strand, 5352243 - 5351915
Alignment:
| Q |
126 |
acctgtgtaataccagaatgaataatgtgacaagactattatttcataataatacatggaattttaacaaacttcaacataacattgcaaataaaacaca |
225 |
Q |
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| T |
5352243 |
acctatgtaataccagaatgaataatgtgacaagactattatttcataataatacatggaattttaacaaacttcaacataacattgtaaatcaaacaca |
5352144 |
T |
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| Q |
226 |
ggacaaggcaacaatgcaaataaaattctaaatgtaaataaagaacaaatacgttttattaattgaataaaaatcacgattgaagcaatttatggaactt |
325 |
Q |
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| T |
5352143 |
ggacaaggcaacaatgcaaataaaattctaaatgcaaataaagaacaa-tacatttttttaattgaataaaaatcacgattgaagcaatttatggaactt |
5352045 |
T |
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| Q |
326 |
aaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcg |
425 |
Q |
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| T |
5352044 |
aaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcg |
5351945 |
T |
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| Q |
426 |
ccatcaccgttaaattttgctggaggctga |
455 |
Q |
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| T |
5351944 |
ccatcaccgttaaattttgctggaggctga |
5351915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 328 - 455
Target Start/End: Complemental strand, 5345024 - 5344897
Alignment:
| Q |
328 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc |
427 |
Q |
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| T |
5345024 |
agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaattgccaacaacctattcttagcatcttcatcaatcaaatcacc |
5344925 |
T |
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| Q |
428 |
atcaccgttaaattttgctggaggctga |
455 |
Q |
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| T |
5344924 |
atcactattaaattttgctggaggctga |
5344897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 5325075 - 5325119
Alignment:
| Q |
334 |
ttcaatttttgccttgaagttgaagggtaaatgccttcaaggaca |
378 |
Q |
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| T |
5325075 |
ttcaatttctgccttgaagtttaagggtaaattccttcaaggaca |
5325119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 5345433 - 5345382
Alignment:
| Q |
145 |
gaataatgtgacaagactattatttcataataatacatggaattttaacaaactt |
199 |
Q |
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| T |
5345433 |
gaataatgtgacaagactattatttca-aat--tgcatggaattttaacaaactt |
5345382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 5338089 - 5338147
Alignment:
| Q |
328 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaact |
386 |
Q |
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| T |
5338089 |
agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaact |
5338147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
43 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
108 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 431
Target Start/End: Original strand, 14535283 - 14535375
Alignment:
| Q |
339 |
tttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatca |
431 |
Q |
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| T |
14535283 |
tttttgccttgaagccttagagtaaatgcctgcaaagataaaagaacttgtttcaacttattcttagcctcttcatcaatcaaatcgccatca |
14535375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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