View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12037_high_7 (Length: 434)

Name: NF12037_high_7
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12037_high_7
NF12037_high_7
[»] chr4 (15 HSPs)
chr4 (4-376)||(41860491-41860863)
chr4 (4-376)||(52681467-52681839)
chr4 (2-243)||(30576448-30576688)
chr4 (219-373)||(15056967-15057124)
chr4 (116-212)||(14991327-14991423)
chr4 (194-240)||(47964110-47964156)
chr4 (370-406)||(41861939-41861975)
chr4 (370-406)||(41862030-41862066)
chr4 (370-406)||(41862121-41862157)
chr4 (370-406)||(41862212-41862248)
chr4 (370-406)||(41862403-41862439)
chr4 (370-406)||(41946638-41946674)
chr4 (370-406)||(41946729-41946765)
chr4 (370-406)||(52680359-52680395)
chr4 (370-406)||(53285696-53285732)
[»] chr8 (2 HSPs)
chr8 (1-376)||(14995095-14995470)
chr8 (370-406)||(22732207-22732243)
[»] chr7 (11 HSPs)
chr7 (4-376)||(22005714-22006086)
chr7 (4-376)||(7892490-7892862)
chr7 (1-377)||(3598859-3599241)
chr7 (119-238)||(13604144-13604262)
chr7 (370-406)||(3600149-3600185)
chr7 (370-406)||(5090967-5091003)
chr7 (370-406)||(7891382-7891418)
chr7 (370-406)||(13927440-13927476)
chr7 (370-406)||(22004323-22004359)
chr7 (370-406)||(22004514-22004550)
chr7 (370-406)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (4-376)||(32674006-32674378)
chr5 (180-376)||(22636691-22636891)
chr5 (145-238)||(21122329-21122422)
chr5 (370-406)||(20844506-20844542)
chr5 (370-406)||(23179540-23179576)
chr5 (370-406)||(23179631-23179667)
chr5 (370-406)||(32672891-32672927)
[»] chr3 (15 HSPs)
chr3 (4-376)||(26950254-26950626)
chr3 (4-376)||(36092421-36092793)
chr3 (1-376)||(18200483-18200858)
chr3 (152-238)||(12807577-12807663)
chr3 (145-232)||(14458470-14458557)
chr3 (370-406)||(854976-855012)
chr3 (370-406)||(6953291-6953327)
chr3 (370-406)||(6953430-6953466)
chr3 (370-406)||(6953812-6953848)
chr3 (370-406)||(18199352-18199388)
chr3 (370-406)||(36093873-36093909)
chr3 (370-406)||(36093964-36094000)
chr3 (370-406)||(36947725-36947761)
chr3 (370-406)||(36947864-36947900)
chr3 (370-406)||(36948003-36948039)
[»] chr2 (9 HSPs)
chr2 (4-376)||(13906996-13907368)
chr2 (4-376)||(26454641-26455013)
chr2 (4-376)||(40604478-40604850)
chr2 (370-406)||(32287325-32287361)
chr2 (370-406)||(13899908-13899944)
chr2 (370-406)||(13905806-13905842)
chr2 (370-406)||(26453534-26453570)
chr2 (370-406)||(35433139-35433175)
chr2 (370-406)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (1-376)||(3590335-3590710)
[»] chr1 (8 HSPs)
chr1 (1-376)||(35595565-35595940)
chr1 (4-376)||(2045867-2046239)
chr1 (111-178)||(52589715-52589782)
chr1 (370-406)||(2051974-2052010)
chr1 (370-406)||(39514207-39514243)
chr1 (370-406)||(45507254-45507290)
chr1 (370-406)||(45507403-45507439)
chr1 (370-406)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (370-406)||(41422-41458)
scaffold0121 (370-406)||(41240-41276)
scaffold0121 (370-406)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (370-406)||(36132-36168)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 41860491 - 41860863
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  41860491 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 41860590  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860591 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 41860690  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860691 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 41860790  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41860791 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 52681839 - 52681467
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  52681839 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaatctccttctagaatataacaaacaaaaaaagaga 52681740  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  52681739 tgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccga 52681640  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52681639 atttgaaaattcctgaattgcaaaatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaag 52681540  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  52681539 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 30576448 - 30576688
Alignment:
Q  2 tttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac-------aaccaccaccgcataaacctccttctagaatataacaaaccg 94  Q
    |||| |||||||||||| ||||||| |||| |||  ||||||||||||||        ||||||| ||||||||||||| |||||||| |||            
T  30576448 tttattcaaccaccaccatataaatcatcagcgcaggggccttcttgcaagttacgaaaaccaccgccgcataaacctcgttctagaaaatat------- 30576540  T
Q  95 aaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattc 194  Q
     |||||||||| |||||||||||||| ||||| |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||    
T  30576541 -aaaagagatggtaataaattagataacaatgaaattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattc 30576639  T
Q  195 caaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacc 243  Q
    ||||| | | |||| ||||| ||  |||||||||| |||||||||||||    
T  30576640 caaccgccattttggaaatttctctactgcaaaatgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 373
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  219 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 314  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  315 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 373  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 14991423 - 14991327
Alignment:
Q  116 agatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaa 212  Q
    |||||||||||||||||| ||  |||||  | |||||||||||||| |||||| |||||||||  |   ||||||||| ||||||| |||| |||||    
T  14991423 agatagcaatgcaattcagaatctcatcataatacaaataaccaaagatcaaattaaacaaatattttcactcttattacaacccccaattagaaaa 14991327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
Q  194 ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 240  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||    
T  47964110 ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa 47964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 14995095 - 14995470
Alignment:
Q  1 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaag 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  14995095 gtttaatcaaccaccaccgtataaattatcaccacgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaag 14995194  T
Q  101 agatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995195 agatgataataaattagatagcaatgcaattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccc 14995294  T
Q  201 cgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995295 cgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgc 14995394  T
Q  301 aagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14995395 aagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 22006086 - 22005714
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  22006086 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 22005987  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22005986 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccga 22005887  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005886 atttgaaaattcctgaactgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 22005787  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22005786 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 7892862 - 7892490
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  7892862 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 7892763  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  7892762 tgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccga 7892663  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7892662 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaag 7892563  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7892562 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 3598859 - 3599241
Alignment:
Q  1 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttcta------gaatataacaaaccg 94  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||      
T  3598859 gtttaatcaaccaccaccgtataaattatcatcgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagatctagaatataacaaacaa 3598958  T
Q  95 aaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  3598959 aaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaatgctcccactcttattc 3599058  T
Q  195 caaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagc 294  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599059 caaccccgaatttgaaaattcctgaactacaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagc 3599158  T
Q  295 tattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 377  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599159 tattgcaagctattttgtacaatagaggaattgaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 13604144 - 13604262
Alignment:
Q  119 tagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctg 218  Q
    ||||||| ||||| ||| | ||| | |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| |     
T  13604144 tagcaatacaatttaaacactcaccagattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat- 13604242  T
Q  219 aactgcaaaatcaacaaacc 238  Q
    || || ||||||||||||||    
T  13604243 aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 32674378 - 32674006
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  32674378 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 32674279  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32674278 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 32674179  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32674178 atttgaaaattcctgaattgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 32674079  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32674078 ttattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 180 - 376
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  180 ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 275  Q
    ||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  276 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 375  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  376 a 376  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
Q  145 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 238  Q
    |||||| ||||||||||||| ||| ||||||||||||  |||||||||   |||||| ||||| ||||||| |  || | ||||||||||||||    
T  21122422 gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc 21122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 26950626 - 26950254
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  26950626 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 26950527  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950526 tgataataaattagataacaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 26950427  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950426 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 26950327  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  26950326 ctattttgtacaatagaggaattgaatgcaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 36092421 - 36092793
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  36092421 taatcaaccaccactgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 36092520  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092521 tgataataaattagatagcaatgcaattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 36092620  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092621 atttgaaaattcatgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 36092720  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36092721 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 18200858 - 18200483
Alignment:
Q  1 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  18200858 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaag 18200759  T
Q  101 agatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18200758 agatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccc 18200659  T
Q  201 cgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgc 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18200658 caaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgc 18200559  T
Q  301 aagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18200558 aagctattttgtacaatagaggaattgaatggagagaaagatgtgtggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  152 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 238  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
Q  145 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa 232  Q
    |||||| ||| ||||||||| ||| ||||||||||||  |||||||||   ||| || ||||||||||||| | ||||| ||||||||    
T  14458470 gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 13907368 - 13906996
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  13907368 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 13907269  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13907268 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccga 13907169  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907168 atttgaaaattcctgaactgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 13907069  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13907068 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 26455013 - 26454641
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  26455013 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 26454914  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  26454913 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccga 26454814  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26454813 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaag 26454714  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26454713 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 40604850 - 40604478
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  40604850 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 40604751  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  40604750 tgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccga 40604651  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  40604650 atttgaaaatttctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaag 40604551  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40604550 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 3590710 - 3590335
Alignment:
Q  1 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  3590710 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaag 3590611  T
Q  101 agatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590610 agatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccc 3590511  T
Q  201 cgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgc 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3590510 cgaatttgaaaattgctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgc 3590411  T
Q  301 aagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  3590410 aagctattttgtacaatagaggaattgaatagagagaaagatgtgtggttaaccttagtcacataaaagaggagga 3590335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 35595565 - 35595940
Alignment:
Q  1 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  35595565 gtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaagg 35595664  T
Q  101 agatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35595665 agatgataataaattagatagcaatgcaattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccc 35595764  T
Q  201 cgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35595765 cgaatttgaaaattcctgaactgcaaaatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgc 35595864  T
Q  301 aagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35595865 aagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 35595940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 2045867 - 2046239
Alignment:
Q  4 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2045867 taatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagaga 2045966  T
Q  104 tgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccga 203  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  2045967 tgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccga 2046066  T
Q  204 atttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaag 303  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2046067 atttgaaaattcctgaactgcaaaataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaag 2046166  T
Q  304 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2046167 ctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 2046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 52589782 - 52589715
Alignment:
Q  111 aaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 178  Q
    ||||||||||||||||||||||||||| || |   |||||||||||| ||||||||||  ||||||||    
T  52589782 aaattagatagcaatgcaattcaaaaactcgttacattacaaataacaaaaaatcaaatcaaacaaat 52589715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  370 aggaggatagaaattaggaaatcatggttagggtttg 406  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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