View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12037_high_9 (Length: 409)
Name: NF12037_high_9
Description: NF12037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12037_high_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 103 - 409
Target Start/End: Complemental strand, 3002011 - 3001704
Alignment:
| Q |
103 |
gataactctgtaaaaacaagtcaat-gtcataaagtttggacaagaaactgcagcaattaccgtttatgcaacctttaaatagtattactatcccattta |
201 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002011 |
gataactatgtaaaaacaagtcaaaagtcataaagtttggacaagaaactgcagcaattaccatttatgcaacctttaaatagtattactatcccattta |
3001912 |
T |
|
| Q |
202 |
gtacaatatatcattagatatcaatcattatattgtacagcagcagatgtcaaagcacattatattcgtattcataaccaacgcatgctagtaaaatatt |
301 |
Q |
| |
|
||| |||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
3001911 |
gtataatatatcattacata-caatcattatattgtgcagcagcagatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatt |
3001813 |
T |
|
| Q |
302 |
tccgtagcggca-caatttagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacac |
400 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3001812 |
tccgtagtggcaacaatttagacattgcacaaaaaactgcagtagcttacgtattgagcatcttgaaagcagcacttcattttccaaaatgaggcaacac |
3001713 |
T |
|
| Q |
401 |
catgcttaa |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
3001712 |
catgcttaa |
3001704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16895126 - 16895055
Alignment:
| Q |
18 |
tacttttccttttggggaagagaaaacattttagaccc--aatgtgtatactgcatgattcaactgggttta |
87 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
16895126 |
tacttttccctttggggaagagaaaacattttagacccataatatgtatactgcatgattcaattgggttta |
16895055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 219 - 409
Target Start/End: Complemental strand, 32707096 - 32706906
Alignment:
| Q |
219 |
atatcaatcattatattgtacagcagcagatgtcaaagcacattatattcgtattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707096 |
atatcaatcattatattgtgcagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
32706997 |
T |
|
| Q |
319 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32706996 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaa |
32706906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University