View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_high_12 (Length: 249)
Name: NF12038_high_12
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32057595 - 32057823
Alignment:
| Q |
1 |
cacaagctctagccaacttcaaatgctccccaaagctctacatacgcatcacaactctctaatcctttcgacaaaccgcaaatccactccccattttcac |
100 |
Q |
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| T |
32057595 |
cacaagctctagctaacttcaaatgctccccaaagctcaacatacgcatcacaactccctaatcttttcgacaaaccgcaaatccactccccattttcac |
32057694 |
T |
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| Q |
101 |
cctgcaacactactccacgacgcgccattggtattgagacggatccatcctatctccagtggcttccaagaaatattctccaccactctcctactattag |
200 |
Q |
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| T |
32057695 |
cctgcaacaccactccaagacgcgccattggtattgagacggatccatcctatctccagtggcttccaagaaatattctccaccactctcctactattag |
32057794 |
T |
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| Q |
201 |
caatcaggggatgaatatattgatagtcc |
229 |
Q |
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| T |
32057795 |
caatcaggggatgaatatattgatagtcc |
32057823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 587710 - 587612
Alignment:
| Q |
131 |
gtattgagacggatccatcctatctccagtggcttccaagaaatattctccaccactctcctactattagcaatcaggggatgaatatattgatagtcc |
229 |
Q |
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| T |
587710 |
gtattaagatggatcgatccaatctccggtggcttctaagatatattctccaccactatcctactactagcgatcataggatgattatattgattgtcc |
587612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 587822 - 587746
Alignment:
| Q |
42 |
atacgcatcacaactctctaatcctttcgacaaaccgcaaatccactccccattttcaccctgcaacactactccac |
118 |
Q |
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| T |
587822 |
atacgaatcacaactccctaatccttctgagaaaccacatatccactaaccattttcaccctgcaaaactcctccac |
587746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 50365341 - 50365414
Alignment:
| Q |
38 |
ctacatacgcatcacaactctctaatcctttcgacaaaccgcaaatccactccccattttcaccctgcaacact |
111 |
Q |
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| T |
50365341 |
ctacatatgcatcacaactccccaatccatttgagaaacgacaaatccactccacattgtcaccttgcaacact |
50365414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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