View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_high_2 (Length: 563)
Name: NF12038_high_2
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 6640233 - 6640531
Alignment:
| Q |
25 |
gatatgaatattcaaacgaaggtatcacaaacctttagaaccaataaatttttatttaatacttcaatgctgtcatggttttatagatctatgatattta |
124 |
Q |
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| T |
6640233 |
gatatgaatattcaaacgaaggaatcacaaacctttagaaccaataaatttttatttaatacttcaatgctgtcatggttttatagatctatgatattta |
6640332 |
T |
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| Q |
125 |
atttgtgatgttggtttcttgtttgtccttggttttccccaattattaactctacacttttaacttttgaatttattactcgatcaagttgaaagcttgc |
224 |
Q |
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| T |
6640333 |
atttgtgatgttggtttcttgtttgtccttggttttccccaattattaactctacacttttaacttttgaatttattactcgatcaagttgaaagcttgc |
6640432 |
T |
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| Q |
225 |
agatgtctgcgctctgcagaatgagaagatgggtacattgaaagagctcatacccgatgcaacaaggcttatgaatgctagagttttccaagtttcttc |
323 |
Q |
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| T |
6640433 |
agatctctgcgctctgcagaatgagaagatgggtacattgaaagagctcatacccgatgcaacaaggcttatgaatgctagagttttccaagtttcttc |
6640531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 388 - 552
Target Start/End: Original strand, 6640596 - 6640751
Alignment:
| Q |
388 |
gtcttatagacggataaattatcttacatgcttgatgatgccgtcatgaggagctttttcatgcatcagaagaggagtcgtgtttcagcagtttcagcaa |
487 |
Q |
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| T |
6640596 |
gtcttatagacggataaattatcttacatgcttgatgatgccgtcatgaggagctttttcatgcatcagaagaggagtcgt---------gtttcagcaa |
6640686 |
T |
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| Q |
488 |
tttatggagtctttttcacaatgtcagtcacatctacctctgttaagatccatctcatccttcat |
552 |
Q |
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| T |
6640687 |
tttatggagtctttttcacaatgtcagtcacatctacctctgttaagatccatctcatccttcat |
6640751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 15129701 - 15129749
Alignment:
| Q |
42 |
gaaggtatcacaaacctttagaaccaataaatttttatttaatacttca |
90 |
Q |
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| T |
15129701 |
gaaggtatcacatacctttagaaccaataaatttttatttagtacttca |
15129749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 8730453 - 8730411
Alignment:
| Q |
485 |
caatttatggagtctttttcacaatgtcagtcacatctacctc |
527 |
Q |
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| T |
8730453 |
caatttatggagtctttttcaccaggtcattcacatctacctc |
8730411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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