View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_high_4 (Length: 461)
Name: NF12038_high_4
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 22698548 - 22698100
Alignment:
| Q |
1 |
ttagatcgctatcgtcaacctttgtttaaaaccctgattacaaatataatattattaattaggatcgagtttcgaaaaagctatacaaccacgatcttga |
100 |
Q |
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| T |
22698548 |
ttagatcgctatcgccaacctttgtttaaaaccctgattacaaatataatattatta----ggatcgagttttgaaaaagctatacaaccacgatcttga |
22698453 |
T |
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| Q |
101 |
ctacgacatcaaggtttttgtcgtcttcatgactg--gttgagatcgcattggcgacatttgactgcaatttaaaacaacttg----tgcttgtctgttt |
194 |
Q |
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| T |
22698452 |
ctacgacatcaaggtttttgtcgtcttcatgactgtggttgagaacgcattggcgacatttgactgcaatttaaaacaacttgcttgtgtatgtctgttt |
22698353 |
T |
|
| Q |
195 |
gtgtgcacttttgaatataaagtgaaatctaacaactatgttttgtccaattgcagatcgttttatacatggaactatttgtaagttcaagatttggtct |
294 |
Q |
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| T |
22698352 |
gtgtgcacttttgaatataaagtgaaatctaataactatgatttgtccaattgcagatcgttttatacatggaactatttgtaagtttaagatttgatct |
22698253 |
T |
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| Q |
295 |
gcttgcagtgctttttatattttgttttggtaaatttaatttctcatgtatgctcaaaagtgcatagttcttattgtaggcttcttgtgttgagttttta |
394 |
Q |
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| T |
22698252 |
tcttgcagtgctttttatattttgttttgctaaatttaatttctcatgtatgctcaaaagtgcatagttcttattgtaggcttcttgtgttgagttttta |
22698153 |
T |
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| Q |
395 |
acacttataagtgataatctctcatcacttttccccaacaccagcatgttcat |
447 |
Q |
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| T |
22698152 |
acacttataagtgataatctctcatcacttttccctaacaccagcatgttcat |
22698100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 187 - 442
Target Start/End: Complemental strand, 22686558 - 22686303
Alignment:
| Q |
187 |
gtctgtttgtgtgcacttttgaatataaagtgaaatctaacaactatgttttgtccaat-tgcagatcgttttatacatggaactatttgtaagttcaag |
285 |
Q |
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| T |
22686558 |
gtctgtgtgtgtgaagttgtgaatataaagtgaaatctaacaactatgttttgtgcaagctgcagatcattttatccttggaactatttgtaagttcaag |
22686459 |
T |
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| Q |
286 |
atttggtctgcttgcagtgctttttatattttgttttggtaaatttaatttctcatgtatgctcaaaagtgcatagttcttatt-gtaggcttcttgtgt |
384 |
Q |
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| T |
22686458 |
acttgatctgtttgcaattctttctatgttagatt--gctaaatttaatctcaaatgtgtgctcaaaggtgcattgttcttatttgtagggtgcttctgt |
22686361 |
T |
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| Q |
385 |
tgagtttttaacacttataagtgataatctctcatcacttttccccaacaccagcatg |
442 |
Q |
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| T |
22686360 |
tgagtttttaacacttgtaagtgataatctctctgcacttttccccaacaccagcatg |
22686303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 22687839 - 22687803
Alignment:
| Q |
98 |
tgactacgacatcaaggtttttgtcgtcttcatgact |
134 |
Q |
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| T |
22687839 |
tgactacgacatcaaggtttttgttgtcttcacgact |
22687803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 33097091 - 33097178
Alignment:
| Q |
354 |
gtgcatagttcttat-tgtaggcttcttgtgttgagtttttaacacttataagtgataatctctcatcacttttccccaacaccagcat |
441 |
Q |
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| T |
33097091 |
gtgcatagtttttatatgtaagcttcttatgtt-agttttcaacacttgtcattgataacctttcatcacttttcccctacactagcat |
33097178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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