View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12038_high_6 (Length: 394)

Name: NF12038_high_6
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12038_high_6
NF12038_high_6
[»] chr7 (4 HSPs)
chr7 (1-379)||(39526758-39527136)
chr7 (1-58)||(39525721-39525778)
chr7 (1-84)||(43938150-43938233)
chr7 (8-58)||(35769775-35769825)
[»] chr4 (11 HSPs)
chr4 (1-118)||(53752281-53752398)
chr4 (1-118)||(53753356-53753473)
chr4 (5-118)||(13231288-13231401)
chr4 (1-84)||(12691451-12691534)
chr4 (1-84)||(47980730-47980813)
chr4 (1-84)||(54961476-54961559)
chr4 (10-56)||(48532280-48532326)
chr4 (15-84)||(34238529-34238598)
chr4 (15-84)||(47862211-47862280)
chr4 (36-84)||(13872325-13872373)
chr4 (36-84)||(53559467-53559515)
[»] chr3 (8 HSPs)
chr3 (246-379)||(43698777-43698898)
chr3 (1-122)||(7463784-7463905)
chr3 (1-122)||(7481882-7482003)
chr3 (38-122)||(7482957-7483041)
chr3 (1-84)||(10749363-10749446)
chr3 (36-84)||(11312991-11313039)
chr3 (1-84)||(40256919-40257002)
chr3 (35-84)||(21300389-21300438)
[»] chr1 (10 HSPs)
chr1 (1-77)||(28533822-28533898)
chr1 (1-84)||(6056421-6056504)
chr1 (15-84)||(739278-739347)
chr1 (15-84)||(1040357-1040426)
chr1 (15-84)||(1047263-1047332)
chr1 (36-84)||(5183762-5183810)
chr1 (1-84)||(2953720-2953803)
chr1 (15-84)||(25415100-25415169)
chr1 (36-84)||(12577268-12577316)
chr1 (36-84)||(46849914-46849962)
[»] chr2 (8 HSPs)
chr2 (1-84)||(16367219-16367302)
chr2 (12-121)||(15075095-15075204)
chr2 (35-118)||(14243930-14244013)
chr2 (1-84)||(1149982-1150065)
chr2 (1-84)||(20911175-20911258)
chr2 (12-65)||(34404970-34405023)
chr2 (13-65)||(43236561-43236613)
chr2 (36-84)||(45663764-45663812)
[»] chr8 (12 HSPs)
chr8 (1-86)||(27856787-27856872)
chr8 (15-84)||(7649-7718)
chr8 (36-84)||(11478225-11478273)
chr8 (1-84)||(25287837-25287920)
chr8 (1-84)||(26739762-26739845)
chr8 (15-74)||(29190219-29190278)
chr8 (1-84)||(36623609-36623692)
chr8 (1-84)||(37343038-37343121)
chr8 (1-84)||(43866756-43866839)
chr8 (13-122)||(36574874-36574983)
chr8 (15-76)||(41251182-41251243)
chr8 (5-77)||(43073612-43073684)
[»] chr6 (9 HSPs)
chr6 (1-118)||(22540045-22540162)
chr6 (1-84)||(21880620-21880703)
chr6 (1-84)||(32337609-32337692)
chr6 (1-64)||(23292020-23292083)
chr6 (1-74)||(15819756-15819829)
chr6 (15-84)||(23291803-23291872)
chr6 (1-77)||(13480253-13480329)
chr6 (36-84)||(20561183-20561231)
chr6 (36-84)||(22493960-22494008)
[»] chr5 (8 HSPs)
chr5 (1-84)||(25253131-25253214)
chr5 (1-84)||(25316921-25317004)
chr5 (1-84)||(32052480-32052563)
chr5 (1-84)||(33735569-33735652)
chr5 (1-84)||(37945039-37945122)
chr5 (15-84)||(14745507-14745576)
chr5 (15-84)||(18013671-18013740)
chr5 (1-65)||(33735358-33735422)
[»] scaffold0206 (1 HSPs)
scaffold0206 (1-77)||(10370-10446)
[»] scaffold0201 (1 HSPs)
scaffold0201 (15-83)||(14150-14218)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 39527136 - 39526758
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataa 100  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  39527136 tttcgtccctgtacttactaatccttcaaaaacttccctgcaattactaatcatttgacttttgaccctaattacatctgattacttatgtgtcacataa 39527037  T
Q  101 ttagtgacatggcgatgacgtgtcacaacgtgactgggacaaggcctttctgactcagcaattccgacccaaaattactattttgcccttagagaatcca 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  39527036 ttagtgacatggcgatgacgtgtcacaacatgactgggacaaggcctttctgactcagcaattcataaccaaaattactattttgcccttagagaatcca 39526937  T
Q  201 gacatatgagaaaagaccaaaatacccctggttcctttctttcctcttccccacatgaatctgaacttccaaactcaaaacatcacaatcccagacatca 300  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39526936 gacatgtgagaaaagaccaaaatacccctggttcctttctttactcttccccacacgaatctgaacttccaaactcaaaacatcacaatcccagacatca 39526837  T
Q  301 aacccaccttcatctttatcatgaacacacaacgtaatcgccgacaaaaccaaatgagtcaaatccggtacactcaaat 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526836 aacccaccttcatctttatcatgaacacacaacgtaatcgccgacaaaaccaaatgagtcaaatccggtacactcaaat 39526758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39525721 - 39525778
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttga 58  Q
    |||||||| | ||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  39525721 tttcgtccttgtacttactaatcctttcaaaacttccctgcaattactaatcacttga 39525778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 43938233 - 43938150
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  43938233 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 43938150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 35769825 - 35769775
Alignment:
Q  8 cctatacttactaatccttccaaaacatccctgcaattactaatcatttga 58  Q
    ||||||||||||||||||| |||||   || ||||||||||||||||||||    
T  35769825 cctatacttactaatcctttcaaaattgccatgcaattactaatcatttga 35769775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 53752281 - 53752398
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataa 100  Q
    ||||||| ||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  53752281 tttcgtctctatacttactaatcctcccaaaccttccctgcatttactaatcatttgacttttggtcctaattacatctgattacttatgtgtcacataa 53752380  T
Q  101 ttagtgacatggcgatga 118  Q
    ||||| || |||| ||||    
T  53752381 ttagtcacgtggcaatga 53752398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 53753473 - 53753356
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataa 100  Q
    ||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||| | ||||||||| | | | |||| ||| ||| | |    
T  53753473 tttcgtccctatacttattaatcctcccaaaactttcctgcaattactaatcatttgacttttggtcctaattacatctaaatgcttacgtggcacgtga 53753374  T
Q  101 ttagtgacatggcgatga 118  Q
    ||| ||||||||| ||||    
T  53753373 ttaatgacatggcaatga 53753356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 13231288 - 13231401
Alignment:
Q  5 gtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataattag 104  Q
    |||||| |||||||||||||| ||||||  |||||||||||| |||||| ||||  ||||| |  ||| |||| |||||||||||||| ||||| | |||    
T  13231288 gtccctgtacttactaatcctcccaaaatttccctgcaattattaatcacttgaaatttggtccaaatcacatttgattacttatgtggcacatgactag 13231387  T
Q  105 tgacatggcgatga 118  Q
    |||  |||||||||    
T  13231388 tgatgtggcgatga 13231401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 12691451 - 12691534
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||    ||||| ||| || |||||||||||||||||| | ||||||||| ||||||    
T  12691451 tttcgtccctgaagttactaatccttccaatctgtccctacaaatattaatcatttgacttttggtcctaattacatctgatta 12691534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 47980730 - 47980813
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||| ||||||||||   |||||||||| || |||||||||||||||||  | ||||||||| ||||||    
T  47980730 tttcgtccctgaagttactgatccttccaatctatccctgcaaatattaatcatttgacttttgatcctaattacatctgatta 47980813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 54961476 - 54961559
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||||||||||| |   |||||||| || |||||||||||||||||  | ||||||||| ||||||    
T  54961476 tttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataattacatctgatta 54961559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 48532326 - 48532280
Alignment:
Q  10 tatacttactaatccttccaaaacatccctgcaattactaatcattt 56  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||||||    
T  48532326 tatatttactaatcctttcaaaacctccatgcaattactaatcattt 48532280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34238529 - 34238598
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||||||| ||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  34238529 ttactaatcctttcaatatgcccctgcaaatattaatcatttgacttttggtcataattacatctgatta 34238598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 47862211 - 47862280
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||||||||     |||||||| ||||||||||||||||||| | | ||||||||| ||||||    
T  47862211 ttactaatccttccaatctgcccctgcaaatactaatcatttgactttttgtcctaattacatctgatta 47862280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 13872373 - 13872325
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  13872373 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 13872325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 53559467 - 53559515
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  53559467 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 53559515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 379
Target Start/End: Original strand, 43698777 - 43698898
Alignment:
Q  246 cttccccacatgaatctgaacttccaaactcaaaacatcacaatcccagacatcaaacccaccttcatctttatcatgaacacacaacgtaatcgccgac 345  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||            |||||||    
T  43698777 cttccctacaggaatctgaacttccaagctcaaaacatcacaatccaatacatcaaacccaccttcatctttatcatcaac------------cgccgac 43698864  T
Q  346 aaaaccaaatgagtcaaatccggtacactcaaat 379  Q
      |||||||||| |||||||||||||||||||||    
T  43698865 gtaaccaaatgactcaaatccggtacactcaaat 43698898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7463784 - 7463905
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataa 100  Q
    ||||||||| ||||||||||||||| |||||| ||   |||||||| ||||||||||| |||||| | ||||| ||| ||||||||||| || ||||| |    
T  7463784 tttcgtccccatacttactaatcctcccaaaaaatttatgcaattattaatcatttgagttttggtcataatttcatttgattacttatatgacacatga 7463883  T
Q  101 ttagtgacatggcgatgacgtg 122  Q
    ||| ||| |||| |||||||||    
T  7463884 ttaatgagatggtgatgacgtg 7463905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7481882 - 7482003
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataa 100  Q
    |||||||||||||||||||||| || || |||  |||||||||||| ||||||||||  |||||| | ||||  ||| ||||||||||| || ||||| |    
T  7481882 tttcgtccctatacttactaattctcccgaaatttccctgcaattattaatcatttgggttttggtcataatctcatttgattacttatatggcacatga 7481981  T
Q  101 ttagtgacatggcgatgacgtg 122  Q
    ||||||| |||| |||||||||    
T  7481982 ttagtgagatggtgatgacgtg 7482003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 7483041 - 7482957
Alignment:
Q  38 ctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatgacgtg 122  Q
    ||||||||||||||||||||| |||||| | ||||   || ||||| |||||||| |||||||||| |||  |||||||||||||    
T  7483041 ctgcaattactaatcatttgagttttggtcctaatctaatttgattgcttatgtggcacataattaatgaggtggcgatgacgtg 7482957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10749363 - 10749446
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||| ||   |||||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  10749363 tttcgtccctgaagttactaatccttctaatctatccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 10749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 11313039 - 11312991
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| ||||||||||||||||||||| | ||||||||| ||||||    
T  11313039 ccctgcaaatactaatcatttgacttttggtcctaattacatctgatta 11312991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 40256919 - 40257002
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||||||||||| |   || ||||| || |||||||||||||||||| | ||||||||| ||||||    
T  40256919 tttcgtccctgaagttactaatccttccaatatgcccttgcaaatattaatcatttgacttttggtcctaattacatctgatta 40257002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 21300438 - 21300389
Alignment:
Q  35 tccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  21300438 tccctgtaaatattaatcatttgacttttggccctaattacatctgatta 21300389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28533822 - 28533898
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacat 77  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |||||||||    
T  28533822 tttcgtccctatacttactaatcctcccaaaccttccctgcaattactaatcatttgacttttggtcctaattacat 28533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 6056421 - 6056504
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||| | ||||| |||||||||| |  ||||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  6056421 tttcgtccctaaaattactgatccttccaatatgtccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 6056504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 739278 - 739347
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||||||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  739278 ttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1040357 - 1040426
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  1040357 ttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 1040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1047263 - 1047332
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  1047263 ttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 1047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 5183810 - 5183762
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  5183810 ccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 5183762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2953803 - 2953720
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || ||||||||||| |||||| | ||||||||||||||||    
T  2953803 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgatttttggtcctaattacatatgatta 2953720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 25415169 - 25415100
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||||||||||| |  | ||||||| || ||| |||||||||||||| | ||||||||| ||||||    
T  25415169 ttactaatccttccaatatgttcctgcaaatattaaccatttgacttttggtcctaattacatctgatta 25415100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 12577316 - 12577268
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  12577316 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 12577268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 46849962 - 46849914
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  46849962 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 46849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16367302 - 16367219
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||||||||||| |   |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  16367302 tttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 16367219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 15075204 - 15075095
Alignment:
Q  12 tacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatg 111  Q
    |||||||||||||||||||||  ||| |||||||||||||||||| | |||||| | |||| || | ||| | |||||||| ||||| |||| | |  ||    
T  15075204 tacttactaatccttccaaaatttccatgcaattactaatcatttaatttttggtcctaatcacgtttgagtgcttatgtggcacatgattactaatgtg 15075105  T
Q  112 gcgatgacgt 121  Q
    ||||||||||    
T  15075104 gcgatgacgt 15075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 14244013 - 14243930
Alignment:
Q  35 tccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatga 118  Q
    ||||||||| |||||||||||||| |||| | | ||||  ||| |||||||||||||| ||||| ||||||||| | |||||||    
T  14244013 tccctgcaaatactaatcatttgagttttagtcctaatctcatttgattacttatgtggcacatgattagtgacgtagcgatga 14243930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1149982 - 1150065
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  1149982 tttcgtccctgaagttactaatccttccaatcggcccctgcaaatattaatcatttgacttttggtcctaattacatttgatta 1150065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20911175 - 20911258
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  20911175 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcataattacatctgatta 20911258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 34405023 - 34404970
Alignment:
Q  12 tacttactaatccttccaaaacatccctgcaattactaatcatttgacttttgg 65  Q
    |||||||||||||| ||||||  ||||||||| | |||||||||||| ||||||    
T  34405023 tacttactaatcctcccaaaatttccctgcaaattctaatcatttgagttttgg 34404970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 43236561 - 43236613
Alignment:
Q  13 acttactaatccttccaaaacatccctgcaattactaatcatttgacttttgg 65  Q
    ||||||||||||| ||||| | ||||||||| || ||||||||||| ||||||    
T  43236561 acttactaatcctcccaaaccttccctgcaaatattaatcatttgagttttgg 43236613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 45663812 - 45663764
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  45663812 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 45663764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27856787 - 27856872
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattact 86  Q
    ||||||||||  | ||||||||||||||||  |  |||||||| || |||||||||||||||||| | ||||||||| ||||||||    
T  27856787 tttcgtccctgaagttactaatccttccaatccgcccctgcaaatattaatcatttgacttttggtcttaattacatttgattact 27856872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 7718 - 7649
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||||||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  7718 ttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggtcataattacatctgatta 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 11478225 - 11478273
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||||| ||||||||| ||||||    
T  11478225 ccctgcaaatattaatcatttgacttttggccctaattacatctgatta 11478273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25287837 - 25287920
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  25287837 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 25287920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 26739762 - 26739845
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||||||| ||| |  ||||||||| || |||||||||||| ||||| | ||||||||| ||||||    
T  26739762 tttcgtccctgaaattactaatcctttcaatatgtccctgcaaatattaatcatttgacgtttggtcctaattacatctgatta 26739845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 29190219 - 29190278
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 74  Q
    ||||||||||||||||   |||||||||| || |||||||||||||||||| | ||||||    
T  29190219 ttactaatccttccaatctatccctgcaaatattaatcatttgacttttggtcctaatta 29190278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36623692 - 36623609
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||| ||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  36623692 tttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 36623609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37343121 - 37343038
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||| ||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  37343121 tttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 37343038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43866756 - 43866839
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||| ||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  43866756 tttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 43866839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 36574874 - 36574983
Alignment:
Q  13 acttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatgg 112  Q
    ||||||||||||| ||||| | ||||||||| || ||||||||||| |||||| | |||  |||| | |||||  | ||| ||||| ||||||||  |||    
T  36574874 acttactaatcctcccaaatcttccctgcaaatattaatcatttgagttttggtcctaaacacatttaattaccgacgtggcacatgattagtgaggtgg 36574973  T
Q  113 cgatgacgtg 122  Q
     |||||||||    
T  36574974 tgatgacgtg 36574983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 41251182 - 41251243
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattaca 76  Q
    |||||||||||||||| |  ||||| ||| || |||||||||||||||||| | ||||||||    
T  41251182 ttactaatccttccaatatgtccctacaaatattaatcatttgacttttggtcataattaca 41251243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 43073612 - 43073684
Alignment:
Q  5 gtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacat 77  Q
    ||||||| |||||| |||||| | ||| | |||||||||||||||||||| | |||||||  | |||||||||    
T  43073612 gtccctacacttaccaatcctcctaaaccttccctgcaattactaatcatatcacttttgatcctaattacat 43073684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 22540045 - 22540162
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataa 100  Q
    ||||||| |||||||||||||||||| ||||   ||||| ||||||| |||||||||| ||||||   ||||  ||| ||||||||| |||| ||  | |    
T  22540045 tttcgtcgctatacttactaatcctttcaaactttccctacaattaccaatcatttgaattttggttctaatctcatttgattacttttgtggcaattga 22540144  T
Q  101 ttagtgacatggcgatga 118  Q
    |||||||| |||||||||    
T  22540145 ttagtgacgtggcgatga 22540162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21880703 - 21880620
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||   |||||||||| || ||| |||||||||||||| | ||||||||| ||||||    
T  21880703 tttcgtccctgaagttactaatccttccaatctatccctgcaaatattaagcatttgacttttggtcctaattacatctgatta 21880620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32337609 - 32337692
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | |||||||||||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  32337609 tttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgggcctaattacatctgatta 32337692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23292083 - 23292020
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttg 64  Q
    ||||||||||  | ||||||||||||||||   |||||||||| || |||||||||||||||||    
T  23292083 tttcgtccctgaagttactaatccttccaatctatccctgcaaatattaatcatttgacttttg 23292020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15819829 - 15819756
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 74  Q
    ||||||||||  | ||||||||||||||||   | || ||||| ||||||||||||||||||||| | ||||||    
T  15819829 tttcgtccctgaagttactaatccttccaatctacccttgcaaatactaatcatttgacttttggtcctaatta 15819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 23291803 - 23291872
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  23291803 ttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 23291872  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13480253 - 13480329
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacat 77  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | |||||||||    
T  13480253 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacat 13480329  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 20561231 - 20561183
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  20561231 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 20561183  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 22493960 - 22494008
Alignment:
Q  36 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  22493960 ccctgcaaatattaatcatttgacttttggtcctaattacatttgatta 22494008  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25253131 - 25253214
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  25253131 tttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 25253214  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25316921 - 25317004
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  25316921 tttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 25317004  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 32052563 - 32052480
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  32052563 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 32052480  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33735652 - 33735569
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  33735652 tttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 33735569  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37945039 - 37945122
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  37945039 tttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 37945122  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 14745507 - 14745576
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  14745507 ttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 14745576  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 18013671 - 18013740
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 84  Q
    |||||||||||||||| |   |||||||| || ||||||||||||||||||   ||||||||| ||||||    
T  18013671 ttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggttttaattacatctgatta 18013740  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33735358 - 33735422
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttgg 65  Q
    ||||||||||  | ||||||||||||||||    ||||||||| || ||||||||||||||||||    
T  33735358 tttcgtccctgaaattactaatccttccaatctgtccctgcaaatattaatcatttgacttttgg 33735422  T

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Target: scaffold0206 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10370 - 10446
Alignment:
Q  1 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacat 77  Q
    ||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | |||||||||    
T  10370 tttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacat 10446  T

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Target: scaffold0201 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 14218 - 14150
Alignment:
Q  15 ttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatt 83  Q
    ||||||||||||||||     |||| ||| || |||||||||||||||||| | |||||||||||||||    
T  14218 ttactaatccttccaatctgcccctacaaatattaatcatttgacttttggtcctaattacatatgatt 14150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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