View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12038_low_1 (Length: 722)

Name: NF12038_low_1
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12038_low_1
NF12038_low_1
[»] chr1 (3 HSPs)
chr1 (1-498)||(1718331-1718827)
chr1 (496-702)||(1718094-1718300)
chr1 (632-679)||(38483818-38483865)
[»] chr5 (5 HSPs)
chr5 (1-437)||(26353349-26353786)
chr5 (625-705)||(26354094-26354174)
chr5 (160-437)||(9816296-9816573)
chr5 (632-705)||(9815905-9815978)
chr5 (633-699)||(27472644-27472710)
[»] chr3 (24 HSPs)
chr3 (5-385)||(26648411-26648791)
chr3 (174-407)||(20006865-20007089)
chr3 (162-338)||(26654458-26654634)
chr3 (632-709)||(20015375-20015452)
chr3 (633-705)||(20007447-20007519)
chr3 (188-437)||(20014808-20015057)
chr3 (173-297)||(20033036-20033160)
chr3 (625-709)||(20033501-20033585)
chr3 (625-701)||(26647879-26647955)
chr3 (626-709)||(19951991-19952074)
chr3 (174-407)||(17115339-17115565)
chr3 (1-141)||(20047353-20047494)
chr3 (199-343)||(19952483-19952627)
chr3 (170-297)||(20032897-20033022)
chr3 (628-666)||(26654058-26654096)
chr3 (625-674)||(20006421-20006470)
chr3 (625-709)||(19839260-19839344)
chr3 (625-709)||(19956951-19957035)
chr3 (496-623)||(26648113-26648243)
chr3 (633-708)||(19813151-19813226)
chr3 (647-701)||(19849871-19849925)
chr3 (6-94)||(20014629-20014715)
chr3 (255-319)||(19990584-19990648)
chr3 (625-709)||(20035770-20035854)
[»] chr8 (1 HSPs)
chr8 (625-699)||(22685507-22685581)
[»] scaffold0038 (1 HSPs)
scaffold0038 (634-673)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (634-673)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 1718827 - 1718331
Alignment:
Q  1 acaagcatatcagttaataaaaatttatacatcacaactcattaaaactaataatactttctccttcatttgttatcaacaaaatgaagagtataaaaga 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1718827 acaagcatatcagttaataaaaatttatacatcataactcattaaaactaatattactttctccttcatttgttatcaacaaaatgaagagtataaaaga 1718728  T
Q  101 gcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaannnnnnnnaaggaagaaacgatgatggctgttgattcctcaaaacactagtgagtagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718727 gcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaaatttttt-aaggaagaaacgatgatggctgttgattcctcaaaacactagtgagtagt 1718629  T
Q  201 tgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718628 tgcctcaactcttcatccttcttctcccacaaacccattaaccgtaacatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgc 1718529  T
Q  301 attccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtg 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718528 attcctcttttaacaaaaccataacttcatcatctcttgcttccctttctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtg 1718429  T
Q  401 aaactgagaatattgctgcgcagcagttacattgttgttcggagcaacnnnnnnnctgatagaaaagtttttgcatcttgcttcttctctcccatttg 498  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||    
T  1718428 aaactgagaatattgctgcgcagcagttacattgttgttcggagtaactttttttctgatagaaaagtttttgcatcttgcttcttctctcccatttg 1718331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 496 - 702
Target Start/End: Complemental strand, 1718300 - 1718094
Alignment:
Q  496 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaacattggttatttaaatgcttaga 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1718300 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataaccagctaaagatgacgaacattggttatttaaatgcttaga 1718201  T
Q  596 ttcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagatttt 695  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||    
T  1718200 ttcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 1718101  T
Q  696 cctacat 702  Q
    |||||||    
T  1718100 cctacat 1718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 632 - 679
Target Start/End: Complemental strand, 38483865 - 38483818
Alignment:
Q  632 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattact 679  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattact 38483818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 26353349 - 26353786
Alignment:
Q  1 acaagcatatcagttaataaaaatttatacatcacaactcattaaaactaataatactttctccttcatttgttatcaacaaaatgaagagtat-aaaag 99  Q
    |||||||||||||||||||||||| |||| || |  |||||||||||||| || |||||  ||||||| ||||| |||||| ||| |||||||| |||||    
T  26353349 acaagcatatcagttaataaaaatatatagatta--actcattaaaactagtattacttattccttcaattgttttcaacacaatcaagagtatgaaaag 26353446  T
Q  100 agcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaannnnnnnna-aggaagaa-acgatgatggctgttgattcctcaaaacactagtgagt 197  Q
    ||||||| |||| |||||||||| |||  || |||||||||||          | |||||| | |||| ||| ||||||||| ||| ||||||||||||     
T  26353447 agcatcactgtcgtgagtttcatgaagggaattcaaaaacaaaataaagttttaagaagaagatgatggtggttgttgattcttcagaacactagtgagg 26353546  T
Q  198 agttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttca 297  Q
    ||||||||||||||||||||| ||||||||  | || | ||||| ||||| ||||||||||||||||||||||||||   ||| |||||||||| |||||    
T  26353547 agttgcctcaactcttcatccctcttctccttcgaatctattaatcgtaacatctcttcctgttgtcttgccagacgcctgagttcctcttgatccttca 26353646  T
Q  298 tgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccga 397  Q
     | ||| | |||||||| |||||| || ||||| ||| ||| |||  ||||||| | ||||| | ||||||||||| |||||||||||||  |||||||     
T  26353647 agtattgctcttttaaccaaaccacaagttcatgatcactttcttttcttccttgtccttcaaccgtttctttagcttctgcttgagcagaaatatccgg 26353746  T
Q  398 gtgaaactgagaatattgctgcgcagcagttacattgttg 437  Q
    |  |||||||  || ||||| || | ||||||||||||||    
T  26353747 gaaaaactgaagatcttgctccgtaacagttacattgttg 26353786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 625 - 705
Target Start/End: Original strand, 26354094 - 26354174
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgag 705  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgag 26354174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 160 - 437
Target Start/End: Complemental strand, 9816573 - 9816296
Alignment:
Q  160 acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctg 259  Q
    |||||| ||| ||||||||| | | || ||||||||| || |||||||||||||||||| ||||||||  |||| | |||||| | || |||||||| ||    
T  9816573 acgatggtggttgttgattcttgagaaaactagtgagaagatgcctcaactcttcatccctcttctccttcaaatctattaactgaaacatctcttcttg 9816474  T
Q  260 ttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttca 359  Q
    ||||||||||| |||    || |||| ||||| ||||| |  || | |||||||| |||||| ||| |||| ||| ||| |||  |||||||||||||||    
T  9816473 ttgtcttgccaaacgcctaagttccttttgatccttcaagtgttgctcttttaaccaaaccagaacatcatgatcactttcttttcttcctttttcttca 9816374  T
Q  360 gctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttg 437  Q
     |   ||||| ||| ||||| |||||||  ||||| ||| ||||||||  || ||||| | |  ||||||||||||||    
T  9816373 accacttcttcagcttctgcgtgagcagaaatatcagagcgaaactgaagatcttgctccacgacagttacattgttg 9816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 632 - 705
Target Start/End: Complemental strand, 9815978 - 9815905
Alignment:
Q  632 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgag 705  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| |  ||||||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgag 9815905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 699
Target Start/End: Complemental strand, 27472710 - 27472644
Alignment:
Q  633 tcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttccta 699  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||| | |||||  |||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccacttctgcgagattttccta 27472644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 7e-48; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 26648791 - 26648411
Alignment:
Q  5 gcatatcagttaataaaaatttatacatcacaactcattaaaactaataatactttctccttcatttgttatcaacaaaatgaagagtat-aaaagagca 103  Q
    ||||||||||| |||||||| ||||  ||| |||||||||||||||||| ||||||||||||| ||||||||||||||| || | ||||| |||||||||    
T  26648791 gcatatcagttgataaaaatatata--tcataactcattaaaactaatactactttctccttcctttgttatcaacaaa-tggacagtatgaaaagagca 26648695  T
Q  104 tcaatgtcatgagtttcataaagaaaagtcaaaaacaaannnnnnnn--aaggaagaaacgatgatggctgttgattcctcaaaacactagtgagtagtt 201  Q
      | ||||||||||||||  | || || |||||||||||          ||| || | | |||| ||| ||||||||| | | |||||||||||| ||||    
T  26648694 ctactgtcatgagtttcaggaggagaattcaaaaacaaattaaagttttaagaaaaagatgatggtggttgttgattctttagaacactagtgaggagtt 26648595  T
Q  202 gcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgca 301  Q
    ||||||||||||||||| ||||||||  |||| | |||||| | || |||| ||| |||||||||||||| ||   ||| |||||||| ||||||| | |    
T  26648594 gcctcaactcttcatccctcttctccttcaaatctattaactgaaacatcttttcttgttgtcttgccaggcgcctgagttcctcttggttcttcaagta 26648495  T
Q  302 ttccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagc 385  Q
    |  | ||||||||||||||| |||||||| ||| ||| ||| |||||||||||||||| | | ||||||||| | |||||||||    
T  26648494 tagctcttttaacaaaaccacaacttcatgatcactttctttccttcctttttcttcaaccgcttctttagcttgtgcttgagc 26648411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 174 - 407
Target Start/End: Original strand, 20006865 - 20007089
Alignment:
Q  174 tgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagac 273  Q
    |||||||| | ||||||||| || || || ||||||||||||||| |||||||||||||| |||||| |  ||| ||||| || |||||||||||||||     
T  20006865 tgattccttagaacactagtaaggaggtgtctcaactcttcatccctcttctcccacaaagccattacctctaacatctcctcttgttgtcttgccagat 20006964  T
Q  274 gtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagc 373  Q
    | | ||| |||||||||||||||| | ||| | |||||||||||||||||| || ||         ||||  || ||||||||||| | |||||||||||    
T  20006965 gcgtgagttcctcttgattcttcaagtattgctcttttaacaaaaccataagtttat---------cttcattttctttttcttcaaccgtttctttagc 20007055  T
Q  374 gtctgcttgagcagccatatccgagtgaaactga 407  Q
     |||||||||||||||||||| ||||||||||||    
T  20007056 ttctgcttgagcagccatatcagagtgaaactga 20007089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 338
Target Start/End: Complemental strand, 26654634 - 26654458
Alignment:
Q  162 gatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgtt 261  Q
    |||| ||| ||||||||||| | |||||||||||| ||||||||||||||||||||  | ||||||| |||| ||||||| ||||| |||||||| ||||    
T  26654634 gatggtggttgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaaacgtaacatctcttcttgtt 26654535  T
Q  262 gtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctctt 338  Q
    ||||||| |||||||| |  |||||||||||||||| ||  | | |||| || |||| || ||||||||||||||||    
T  26654534 gtcttgctagacgtgccatttcctcttgattcttcaagctatgctctttcaataaaatcacaacttcatcatctctt 26654458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 632 - 709
Target Start/End: Original strand, 20015375 - 20015452
Alignment:
Q  632 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtct 709  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||| |||||||| |||||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtct 20015452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 633 - 705
Target Start/End: Original strand, 20007447 - 20007519
Alignment:
Q  633 tcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgag 705  Q
    |||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| |||||||||||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgag 20007519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 188 - 437
Target Start/End: Original strand, 20014808 - 20015057
Alignment:
Q  188 actagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctct 287  Q
    ||||||||| ||||| ||||||||||||||| |||||  |  |||| |||||| |||||| ||||| || ||||||||||||||| |   ||| ||||||    
T  20014808 actagtgagaagttgtctcaactcttcatccctcttcatcttcaaatccattagccgtaacatctcatcttgttgtcttgccagaagcctgagttcctct 20014907  T
Q  288 tgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcag 387  Q
    |||||||||| | ||| | ||||||| ||||||| | |||||| ||| ||| |||  |||| |||| ||||| ||  ||||||||  | |||||||| ||    
T  20014908 tgattcttcaagtattgctcttttaagaaaaccaaagcttcatgatcactttcttttcttctttttacttcaacttcttctttagattgtgcttgagtag 20015007  T
Q  388 ccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttg 437  Q
      ||| |  |||||||||||  || || ||||||| |||  |||||||||    
T  20015008 aaataccatagtgaaactgaagatttttctgcgcaacagccacattgttg 20015057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 173 - 297
Target Start/End: Original strand, 20033036 - 20033160
Alignment:
Q  173 ttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccaga 272  Q
    ||||||||| |  |||||||| || ||||||||||||||||||||  ||||||||| |||| ||| |||||| || |||||||||||||| | | | | |    
T  20033036 ttgattccttaggacactagtaaggagttgcctcaactcttcatctctcttctccctcaaagccaataaccgcaagatctcttcctgttggcgtactaca 20033135  T
Q  273 cgtgcgagctcctcttgattcttca 297  Q
    |||||||| ||| ||||||||||||    
T  20033136 cgtgcgagttccccttgattcttca 20033160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 625 - 709
Target Start/End: Original strand, 20033501 - 20033585
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtct 709  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||  |||||  ||||||| | |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttcctatacgaggtct 20033585  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 625 - 701
Target Start/End: Complemental strand, 26647955 - 26647879
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctaca 701  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | || |||||  ||||||||||    
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctaca 26647879  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 626 - 709
Target Start/End: Complemental strand, 19952074 - 19951991
Alignment:
Q  626 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtct 709  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| |||||| | || |||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacatgaggtct 19951991  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 174 - 407
Target Start/End: Complemental strand, 17115565 - 17115339
Alignment:
Q  174 tgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagac 273  Q
    |||||||| | |||||||||||| |||||| |    |||||| || |||||||   |||| |||||||| | || ||| |||| ||||||||||||||||    
T  17115565 tgattccttagaacactagtgaggagttgcat----tcttcacccctcttctctttcaaagccattaactgaaacatcacttcatgttgtcttgccagac 17115470  T
Q  274 gtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagc 373  Q
    |   ||| || ||||||||||||| | ||| | |||||| || ||||| |  ||||| ||| ||| ||   ||||||||  ||||| |||||||  ||||    
T  17115469 gcctgagttcgtcttgattcttcaagtattgctcttttagcagaaccacattttcatgatcactttct---cttcctttcccttcaactgtttccatagc 17115373  T
Q  374 gtctgcttgagcagccatatccgagtgaaactga 407  Q
     ||||||| |||||||||||| ||||||||||||    
T  17115372 ttctgctttagcagccatatcggagtgaaactga 17115339  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 20047494 - 20047353
Alignment:
Q  1 acaagcatatcagttaataaaaatttatacatcacaactcattaaaactaataatac--tttctccttcatttgttatcaacaaaatgaagagtat-aaa 97  Q
    |||| ||||||||||||||||||| ||||   || ||||||| |||||||||  ||   ||| ||||||||||||||||||||||||  ||||||| |||    
T  20047494 acaatcatatcagttaataaaaatatatag--cataactcatcaaaactaatcttaaaatttatccttcatttgttatcaacaaaatagagagtatgaaa 20047397  T
Q  98 agagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaa 141  Q
    |||| |||| |||||| ||||| || || |||| ||||||||||    
T  20047396 agagaatcactgtcataagtttgatgaacaaaattcaaaaacaa 20047353  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 199 - 343
Target Start/End: Complemental strand, 19952627 - 19952483
Alignment:
Q  199 gttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcat 298  Q
    ||||||||||||||||||| ||||| |||| |||| ||||||||||||| ||||| ||||| |||||| |||  || || || || |||||| ||||||     
T  19952627 gttgcctcaactcttcatctttcttttccctcaaagccattaaccgtaagatctcctcctgctgtcttcccaagcgcgctagttcttcttgaatcttcaa 19952528  T
Q  299 gcattccacttttaacaaaaccataacttcatcatctcttgcttc 343  Q
    | |||   ||||| |||||||||  ||||||| ||| ||| ||||    
T  19952527 gtattggtcttttgacaaaaccacgacttcatgatccctttcttc 19952483  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 20032897 - 20033022
Alignment:
Q  170 ctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgcc 269  Q
    |||||||||||| | ||||||||  || | ||||||||||||||||||| ||||||||| ||||  || ||| || || ||||||||||||||||||||     
T  20032897 ctgttgattccttagaacactag--aggatttgcctcaactcttcatccctcttctccctcaaagacaataatcgcaagatctcttcctgttgtcttgct 20032994  T
Q  270 agacgtgcgagctcctcttgattcttca 297  Q
    | | |   ||| ||||||||||||||||    
T  20032995 acatgcttgagttcctcttgattcttca 20033022  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 666
Target Start/End: Complemental strand, 26654096 - 26654058
Alignment:
Q  628 gagtgtcaacaagattgggaggaaatccaggtggaacac 666  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacac 26654058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 625 - 674
Target Start/End: Original strand, 20006421 - 20006470
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatca 674  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatca 20006470  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 625 - 709
Target Start/End: Complemental strand, 19839344 - 19839260
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtct 709  Q
    ||||||| ||||| |||||||||| |||||||||| |||||| ||| ||| ||| | || ||||| | |||||||||||||||||    
T  19839344 taagagtatcaaccagattgggagaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtct 19839260  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 625 - 709
Target Start/End: Complemental strand, 19957035 - 19956951
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtct 709  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  ||| | |||||||| | |||||||| ||||||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgttaaactttcctacgtgaggtct 19956951  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 26648243 - 26648113
Alignment:
Q  496 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaaca---ttggttatttaaatgctt 592  Q
    |||||||||| |||||||||  ||||| || ||| ||||||||||||||||||| ||||   ||| |||| |  |||||   |||||    |||||||||    
T  26648243 ttgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctt 26648144  T
Q  593 agattcatggattatgccaccacatttgtac 623  Q
    ||||||||||||| |||||||||| ||||||    
T  26648143 agattcatggattttgccaccacacttgtac 26648113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 708
Target Start/End: Complemental strand, 19813226 - 19813151
Alignment:
Q  633 tcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtc 708  Q
    ||||||||||||||||||||| ||||||||||| || || || ||| | |||||| | ||||||||||||| ||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtc 19813151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 701
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  647 aggaaatccaggtggaacaccaacatcattactaattctgttagattttcctaca 701  Q
    |||||||||| |||||| |||||||||||||| | ||||||||| ||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 20014629 - 20014715
Alignment:
Q  6 catatcagttaataaaaatttatacatcacaactcattaaaactaataatactttctccttcatttgttatcaacaaaatgaagagtat 94  Q
    ||||||||||||||||||  ||||  ||| ||||||| ||| ||| || ||||| | ||||||||| |||||||||||||| |||||||    
T  20014629 catatcagttaataaaaacatata--tcataactcatcaaagctagtattacttccgccttcatttcttatcaacaaaatggagagtat 20014715  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 19990648 - 19990584
Alignment:
Q  255 tcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaac 319  Q
    ||||||| |||||||||||||| ||| |||||||||||||||| | ||| | ||||||| |||||    
T  19990648 tcctgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttctcttttaagaaaac 19990584  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 709
Target Start/End: Original strand, 20035770 - 20035854
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttcctacatgaggtct 709  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| ||| | || ||||  ||||||||||||| |||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacatgtggtct 20035854  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 699
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  625 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattactaattctgttagattttccta 699  Q
    |||| |||| ||||||||||  || ||||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 673
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  634 caacaagattgggaggaaatccaggtggaacaccaacatc 673  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 673
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  634 caacaagattgggaggaaatccaggtggaacaccaacatc 673  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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