View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_low_13 (Length: 250)
Name: NF12038_low_13
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 31026984 - 31026753
Alignment:
| Q |
1 |
ctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
31026984 |
ctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttctccgaaagttggtaaggatgtgttcctgagctgccaaccag |
31026885 |
T |
|
| Q |
101 |
ataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcacttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
31026884 |
ataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctagagcatggatatccccatgttgcaaccaataaacacttt |
31026785 |
T |
|
| Q |
201 |
gaatagtaaatttgtgagtattagtttccccc |
232 |
Q |
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|||||||||||| ||||||||| ||||||||| |
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| T |
31026784 |
gaatagtaaattggtgagtattggtttccccc |
31026753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34104189 - 34104427
Alignment:
| Q |
1 |
ctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactag |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||| || |||||||||||| |||| | |||| |||||||||| || |
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| T |
34104189 |
ctcatcatctctcccacatctagtacaaagtggagatatactcactccccacttgcttctctgaaagttggtaacgatgcgctcctaagctgccaacaag |
34104288 |
T |
|
| Q |
101 |
ataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcacttt |
200 |
Q |
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|| ||||||||||||||||||| || |||||||||| |||||||||||| ||| |||||| || ||||||||||| ||||||||||| ||| ||||||| |
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| T |
34104289 |
atgaaagtttgtatacagtgtgatcatttccagtcctacaaagatttccaatcatcctctagagtatggatatccctatgttgcaacctataagcacttt |
34104388 |
T |
|
| Q |
201 |
gaatagtaaatttgtgagtattagtttcccccatcctat |
239 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||| |
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| T |
34104389 |
gaatagtaaacttgtgagtattagtttaccccatcctat |
34104427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 3060440 - 3060240
Alignment:
| Q |
25 |
acaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactagataaaagtttgtatacagtgtggt |
124 |
Q |
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|||||||| |||||| |||| ||| || |||||| | | ||||||||||||||||||||| || || | | | | ||||||||||| ||| || ||| |
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| T |
3060440 |
acaaagtgcagatatgcccactccccatttgcttctacaaaagttggtaaggatgtgttcttgggccacaagccaaataaaagtttgaatatgatgaggt |
3060341 |
T |
|
| Q |
125 |
cctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaatttgtgagtattag |
224 |
Q |
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| |||||||||| ||||||| ||| |||||| || | ||||| ||||| ||||||||||||| ||| |||||| |||| ||||||| |||||||||| |
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| T |
3060340 |
catttccagtccaacaaagaattctaatctccttcaaaggcatgaatatctccatgttgcaacctataagcacttcgaatggtaaattgatgagtattag |
3060241 |
T |
|
| Q |
225 |
t |
225 |
Q |
| |
|
| |
|
|
| T |
3060240 |
t |
3060240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 6323583 - 6323656
Alignment:
| Q |
2 |
tcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaag |
75 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||||| |||| ||| ||||||||| | ||||| |||||||| |
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| T |
6323583 |
tcatcttctctcccacatctagaacaaagtggagatatgcccactccccacttgcttctacgaaaattggtaag |
6323656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 6323681 - 6323769
Alignment:
| Q |
122 |
ggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaa |
210 |
Q |
| |
|
||||||||| |||||||||| || |||| |||||| || | ||||| ||||| ||||||||||||| ||| ||||||||||| ||||| |
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| T |
6323681 |
ggtcctttctagtcccacaatgaattccaatctccttccaaggcatgaatatctccatgttgcaacctataagcactttgaatggtaaa |
6323769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 44812801 - 44812927
Alignment:
| Q |
2 |
tcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactaga |
101 |
Q |
| |
|
||||| ||| ||||||||||| ||||| ||||||||| |||| | | ||||||||| | |||||||||||||||||| | || || |||| | | ||| |
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| T |
44812801 |
tcatcttctctcccacatctaaaacaaa-tggagatatgcccacttcccacttgcttctacgaaagttggtaaggatgcgctcttgggctgtaagcaaga |
44812899 |
T |
|
| Q |
102 |
taaaagtttgtatacagtgtggtccttt |
129 |
Q |
| |
|
|||||||||| ||||| || |||||||| |
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| T |
44812900 |
taaaagtttgaatacaatgaggtccttt |
44812927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 34633939 - 34633983
Alignment:
| Q |
14 |
ccacatctagtacaaagtggagatatacccaatcctcacttgctt |
58 |
Q |
| |
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|||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
34633939 |
ccacatctagtacaaagtggagatatgcccatcccccacttgctt |
34633983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 46011987 - 46012052
Alignment:
| Q |
14 |
ccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatg |
79 |
Q |
| |
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|||||||||| ||||||||||||||| |||| ||| ||||||||| | ||||| ||| |||||||| |
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| T |
46011987 |
ccacatctaggacaaagtggagatatgcccactccccacttgcttctacgaaaattgttaaggatg |
46012052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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