View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_low_15 (Length: 249)
Name: NF12038_low_15
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_15 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 13086267 - 13086504
Alignment:
| Q |
2 |
ctttttgttattccaattatatccttaaacacatgcaacatcctttnnnnnnn-tcttatatcttaagttgaaaatagtaatgataagagttaaaggaac |
100 |
Q |
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| T |
13086267 |
ctttttgttattccaattatatccttaaacacgtgcaacatcctttaaaaaaaatcttatatcttaagttgaaaatagtaatgataagagttaaaggaac |
13086366 |
T |
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| Q |
101 |
tcttaccaaatattacttttaatacatgatagaaaaactcaaataagaagaactaaactacttataggacaaaattattatcagttaaagtgacattaat |
200 |
Q |
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| T |
13086367 |
tcttaccaaatattacttttaatacatgatagaaaaactcaaataagaagaactaaactacttataggacaaaattattatcagttaaagtgacattaat |
13086466 |
T |
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| Q |
201 |
aatcattttacaacccgtcttcaaaagatttgaaccct |
238 |
Q |
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| T |
13086467 |
aatcattttacaacccgtcttcgaaagatttgaaccct |
13086504 |
T |
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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 72081 - 72110
Alignment:
| Q |
3 |
tttttgttattccaattatatccttaaaca |
32 |
Q |
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| T |
72081 |
tttttgttattccaattatatccttaaaca |
72110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 43427890 - 43427849
Alignment:
| Q |
174 |
attattatcagttaaagtgacattaataatcattttacaacc |
215 |
Q |
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| T |
43427890 |
attattattagttaaagtgacactaataaccattttacaacc |
43427849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 7137513 - 7137484
Alignment:
| Q |
3 |
tttttgttattccaattatatccttaaaca |
32 |
Q |
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| T |
7137513 |
tttttgttattccaattatatccttaaaca |
7137484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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