View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_low_16 (Length: 243)
Name: NF12038_low_16
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 25583415 - 25583200
Alignment:
| Q |
11 |
tagtaggacatgttagcttttaacctaggaatctccatttcaatatgtttcatttctattattagttttaatccttgtttatgtgtcttattctatgaat |
110 |
Q |
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| T |
25583415 |
tagtaggacatgttagcttttaacctaggaatctccatttcaatatgtttcatttctattattagttttaatccttgtttatgtgtcttattctatgaat |
25583316 |
T |
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| Q |
111 |
agtgctacttgcactccactttttgcctttcctacatctactagtgaggggaaaataatcacaaaatcttgttatagcaagaaaatcagatagatataag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25583315 |
agtgctacttgcactccactttttgcctttcctacatctactagtgaggggaaaataatcacaaaatcttgttatagcaagaaaatcagatagatataag |
25583216 |
T |
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| Q |
211 |
agtggagagtaaatag |
226 |
Q |
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|||||||||||||||| |
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| T |
25583215 |
agtggagagtaaatag |
25583200 |
T |
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