View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_low_3 (Length: 487)
Name: NF12038_low_3
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 5328578 - 5328122
Alignment:
| Q |
18 |
aacactagcctaattctcattactatctgtctatacacattgttgtgcacacaaatagcgcatagagaagaaacttccttatcattacatcattcacaaa |
117 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5328578 |
aacactagcctaattctcattactatccgtctatatacattgttgtgcacacaaatagcgcatagagaagaaacttccttatcattacgtcattcacaaa |
5328479 |
T |
|
| Q |
118 |
aacgacaacaaccaaactgcaagggaactcttcgagcaaaagcacgaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcatgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328478 |
aacgacaacaaccaaactgcaagggaactcttcgagcaaaagcacgaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcatgtt |
5328379 |
T |
|
| Q |
218 |
cagcggtagctgtccttgtcgcgacagttgtctttgcggcagcttacactgtccctggaggcacagacgaccgcggcttcccaaggttactccatcatcc |
317 |
Q |
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| T |
5328378 |
ctgcggtagctgcccttgtcgcgacagttgtctttgcggcagcttacactgtcccgggaggcacagacgaccacggcttcccaaggttactccatcatcc |
5328279 |
T |
|
| Q |
318 |
tatatttgtagtgttcatggtcatggatgttgtggcacttgcaagttcattggcatcagtggttatgttcctctcaatcctcacatcaccttgtaagtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5328278 |
tatatttgtagtgttcatggtcatggatgttgtggcacttgcaagttcattggcatcagtggttatgttcctctcaatcctcacatcaccttgtgagtta |
5328179 |
T |
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| Q |
418 |
tgggattttaggaggtctctacctaggaaactaatggcaggtttttccttcttgttc |
474 |
Q |
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| T |
5328178 |
tgggattttaggaggtctctacctaggaaactaatggcaggttttgccttcttgttc |
5328122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 5317034 - 5317489
Alignment:
| Q |
18 |
aacactagcctaattctcattactatctgtctatacacattgttgtgcacaca--aatagcgcatagagaagaaacttccttatcattacatcattcaca |
115 |
Q |
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||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
5317034 |
aacactaatctaattctcattactatctatctataca---tgttgtgcacacataaatagcgcatagagaagcgacttccttatcattatgtcattcaca |
5317130 |
T |
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| Q |
116 |
aaaacgacaacaaccaaactgcaagggaactcttcgagcaaaagcacgaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcatg |
215 |
Q |
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| ||| |||||||||||||||| ||||||||||||||| |||| || |||||||| |||||||||||||| |||||||| |||| |||||| |||||||| |
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| T |
5317131 |
agaacaacaacaaccaaactgctagggaactcttcgaggaaaaacatgaacaactgctgaaggatgctcgcgaatggatcaaagagacagctcagtcatg |
5317230 |
T |
|
| Q |
216 |
ttcagcggtagctgtccttgtcgcgacagttgtctttgcggcagcttacactgtccctggaggcacagacgaccgcggcttcccaaggttactccatcat |
315 |
Q |
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||| ||||||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||| |||||| ||||| ||||| |||||| |
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| T |
5317231 |
ttctgcggtagctgtccttgttgcgacagttgtctttgcagctgcttacacggtcccaggaggcacagacgactacggcttgccaagattacttcatcat |
5317330 |
T |
|
| Q |
316 |
cctatatttgtagtgttcatggtcatggatgttgtggcacttgcaagttcattggcatcagtggttatgttcctctcaatcctcacatcaccttgtaagt |
415 |
Q |
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|||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||| |
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| T |
5317331 |
cctatattcgtagtgttcacagtcatggatgttgtggcccttgcaagttcattggcttcagttgttatgtttctctcaatcctcacatcaccttgtgagt |
5317430 |
T |
|
| Q |
416 |
tatgggattttaggaggtctctacctaggaaactaatggcaggtttttccttcttgttc |
474 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
5317431 |
tgtgggattttaggaggtctctacctaggaaactaatggcaggtttcgcattcttgttc |
5317489 |
T |
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