View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_low_4 (Length: 463)
Name: NF12038_low_4
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 5053357 - 5052904
Alignment:
| Q |
1 |
caacacaagagacatagacaaacacgtgtacgtggggaccacagagaaagagatgtgttctgagagtattagcttcaggacctctaaagggttaaaacga |
100 |
Q |
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| T |
5053357 |
caacacaagagacatagacaaacacgtgtacgtggggaccacagagaaagagatgtgttctgagagtattagcttcaggacctctaaagggttaaaacga |
5053258 |
T |
|
| Q |
101 |
atctgatattccttttgttcttgtttggaatgttatgagaaagaagggaaaaaagtattgatcatatttaagaattgtctataatttggattcttttaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5053257 |
atctgatattccttttgttcttgtttggaatgttatgagaaagaagggaaaaaagtattgatcatatttaagaattgtctataatttggattcttttgag |
5053158 |
T |
|
| Q |
201 |
tgttgttatctgacatgtttgtgcatgagctgtctctttgtttgattatgtcttgcactgcatgcctataataaattaattcttttttatgcttgtgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053157 |
tgttgttatctgacatgtttgtgcatgagctgtctctttgtttgattatgtcttgcactgcatgcctataataaattaattcttttttatgcttgtgttg |
5053058 |
T |
|
| Q |
301 |
atatctctattcgatgcataagaaatgaagttttgcatgatttattaagtgttttaacttttaatgattcaattatcaatgtaaacatttacctcccact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053057 |
atatctctattcgatgcataagaaatgaagttttgcatgatttattaagtgttttaacttttaatgattcaattatcaatgtaaacatttacctcccact |
5052958 |
T |
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| Q |
401 |
ctttctcaaggggagagatgcttgaaattatgctagcaacttgaattatcccct |
454 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052957 |
ctttcttaaggtgagagatgcttgaaattatgctagcaacttgaattatcccct |
5052904 |
T |
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