View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12038_low_6 (Length: 415)
Name: NF12038_low_6
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 1719408 - 1719016
Alignment:
| Q |
19 |
acaatgacaagtacaactgaacaaatgttaaataaacatgacactttgaaaatttgaaaagggttgagtaaagcaacaaagtagatgagaagagacagct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1719408 |
acaatgacaagtacaactgaacaaatgttaaataaacatgacactttgaaaatttgaaaagggttgagtaaagcaacaaagtagatgagaagagacagct |
1719309 |
T |
|
| Q |
119 |
actttagcagctcatacactcatagcaacaatgattgttaacattatatgaagtgatactctcgattacactcttcatataacaaaatcaatatcttcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1719308 |
actttagcagctcatacactcatagcaacaatgactgttaacattatatgaagtgatactctcgattacactcttcatataacaaaatcaatatcttcaa |
1719209 |
T |
|
| Q |
219 |
tgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacatttagtcacctactactatttactaccaatgaaagctgttatgtag |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1719208 |
tgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacatttagtcacctactactatttactaccaatgaaagctgttatgtag |
1719109 |
T |
|
| Q |
319 |
cacatgttgtacaagaaaaaaggcattgatatataacagcagaaaatcatatgaaaaatacaagatgatacagaaagaaattgacagcagagg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1719108 |
cacatgttgtacaagaaaaaaggcattgatatataacagcagaaaatcatatgaaaaatacaagatgatacagaaagaaattgacagcagagg |
1719016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 411
Target Start/End: Complemental strand, 26649249 - 26649007
Alignment:
| Q |
169 |
aagtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtccctt |
268 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26649249 |
aagtgatactccagattatgctcttcatataacaaaatcgatatcgtcattggcttcaatattgccatgatctgcataacagactctagttcagtccctt |
26649150 |
T |
|
| Q |
269 |
cacatttagtcacctactactatttactaccaatgaaagctgttatgtagcacatgttgtacaagaaaaaaggcattgatatat--aacagcagaaaatc |
366 |
Q |
| |
|
||| ||||||| || |||| || ||| || ||||||||||| ||||||| |||| ||| |||||||| |||| || | ||||| |||||||| ||||| |
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| T |
26649149 |
cacgtttagtcgcc-actaataattattatcaatgaaagctattatgtatcacaggttatacaagaataaagacactattatatgaaacagcag-aaatc |
26649052 |
T |
|
| Q |
367 |
atatgaaaaatacaagatgatacagaaagaaattgacagcagagg |
411 |
Q |
| |
|
|| ||||||| |||||||| |||||| |||| |||||||||| |
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|
| T |
26649051 |
atgagaaaaatgaaagatgatgcagaaacaaatctacagcagagg |
26649007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 192 - 411
Target Start/End: Original strand, 20014206 - 20014424
Alignment:
| Q |
192 |
ttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacatttagtcacctactactat |
291 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||||||||||| || ||||| ||||||| |
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|
| T |
20014206 |
ttcatataacaaaatcaatatcttcattgacttcaatatttccatgatcttcataacag------attcattcccttcacatgtaatcacc-actactag |
20014298 |
T |
|
| Q |
292 |
ttactaccaatgaaagctgttatgtagcacatgttgtacaaga----aaaaaggcattgatata--taacagcagaaaatcatatgaaaaatacaagatg |
385 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| ||||||||||| ||||||||| | |||| |||||||||||||||| |||||||| |||| | |
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|
| T |
20014299 |
ttactaccaatgaaggctattttgtagcacaggttgtacaagaaaagaaaaaggcactattatacgaaacagcagaaaatcatgagaaaaataaaagacg |
20014398 |
T |
|
| Q |
386 |
atacagaaagaaattgacagcagagg |
411 |
Q |
| |
|
| ||||||||||||||||||||||| |
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|
| T |
20014399 |
gtgcagaaagaaattgacagcagagg |
20014424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 20032281 - 20032366
Alignment:
| Q |
201 |
caaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacatttagtcacctact |
286 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||||||| || ||| | |||| |||||||||||||| ||||||||| |
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|
| T |
20032281 |
caaaatcagcatcttcattgacttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacatttattcacctact |
20032366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 20034450 - 20034535
Alignment:
| Q |
201 |
caaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacatttagtcacctact |
286 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||||||| || ||| | |||| |||||||||||||| ||||||||| |
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|
| T |
20034450 |
caaaatcagcatcttcattgacttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacatttattcacctact |
20034535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 19958468 - 19958393
Alignment:
| Q |
201 |
caaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacattta |
276 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| ||||| | |||||| | |||| |||||||||||||| |
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|
| T |
19958468 |
caaaatcagtatcttcattgacttcaatattgccatgatttgcatcatagcctcaaattcaatcccttcacattta |
19958393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 19836150 - 19836064
Alignment:
| Q |
190 |
tcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtcccttcacattta |
276 |
Q |
| |
|
|||||| | ||||||||||| | ||||| |||||||||||||| |||||||| ||||| || ||| | ||||||||||||||||||| |
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|
| T |
19836150 |
tcttcacacaacaaaatcaacaacttcactgacttcaatattgtcatgatcttcataataggctcaacttcagtcccttcacattta |
19836064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 19904678 - 19904750
Alignment:
| Q |
174 |
atactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcata |
246 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| | ||||| |||||||| | |||||||| |||| |
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|
| T |
19904678 |
atactctagattatgctcttcatataacaaaatcaatatcataaatgaattcaatatcgtcatgatctacata |
19904750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 169 - 411
Target Start/End: Original strand, 26352860 - 26353102
Alignment:
| Q |
169 |
aagtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtccctt |
268 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| || ||| ||||| ||||||| |
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|
| T |
26352860 |
aagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctac-taaaagactcaagttcggtccctt |
26352958 |
T |
|
| Q |
269 |
cacatttagtcacctactactatttactaccaatgaaagctgttatgtagcacatgttgtacaagaaaaaaggcat-tgatatataaca-gcagaaaatc |
366 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||||||||| ||||| |||||| |||||||||||||||||||| | ||| | || ||||||||| |
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|
| T |
26352959 |
cacatttactcacc-gctactaattactaccgatgaaagctattatggagcacagtttgtacaagaaaaaaggcatattatacggagcattcagaaaatc |
26353057 |
T |
|
| Q |
367 |
atatgaaaaatacaagatgatacagaaagaaattgacagcagagg |
411 |
Q |
| |
|
| ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
26353058 |
gtgagaaaaatgaaagatgatgcagaaagaaattgacagcagagg |
26353102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 9817138 - 9816998
Alignment:
| Q |
169 |
aagtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtccctt |
268 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||| ||| || | ||||||||||| |
|
|
| T |
9817138 |
aagtgatactctagattaagctcttcatatctcaaaatcaatattttcactgacttcaatattgccatgatctacataatagcttcaacttcagtccctt |
9817039 |
T |
|
| Q |
269 |
cacatttagtcacctactactatttactaccaatgaaagct |
309 |
Q |
| |
|
| ||||| | | ||||||||| | || ||||||||||||| |
|
|
| T |
9817038 |
tatatttatttaactactactaatgacaaccaatgaaagct |
9816998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 35423226 - 35423153
Alignment:
| Q |
63 |
tttgaaaatttgaaaagggtt--gagtaaagcaacaaagtagatgagaagagacagctactttagcagctcata |
134 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35423226 |
tttgaaattttgaaaagggttatgagtaaagcaacagagtagatgagatgagacagctactttagcagctcata |
35423153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 32304120 - 32304039
Alignment:
| Q |
63 |
tttgaaaatttgaaaagggttgagtaaagcaacaaagtagatgagaagagacagctactttagcagctcatacactcatagca |
145 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| |||||||| || |||| || |||| ||||||||| ||||||||| |
|
|
| T |
32304120 |
tttgaaattttgaaaagggttgagtaaagcagcaaagcagatgagacgacacagttatattag-agctcataccctcatagca |
32304039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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