View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12038_low_9 (Length: 358)
Name: NF12038_low_9
Description: NF12038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12038_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 207 - 345
Target Start/End: Original strand, 5050854 - 5050992
Alignment:
| Q |
207 |
ttctaatgaaatgaaacccatgacaatgtttggtttgcttgacaaaagttacatgaattgacttgaggcaaccaaacggcacatactcacaaataaaatt |
306 |
Q |
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| T |
5050854 |
ttctaatgaaatgaaacccatgacaatgtttggtttgcttgacaaaagttacatgaattgacttgaggcaaccaaacggcacatactcacaaataaaatt |
5050953 |
T |
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| Q |
307 |
gggtggtacaaaggattactagctaattgaatagttgat |
345 |
Q |
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| T |
5050954 |
gggtggtacaaaggattactagctaattgaatagttgat |
5050992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 5050627 - 5050742
Alignment:
| Q |
15 |
aagaacagagaacatgtagacaaccccaaaccggaaaaggaagattctccttttcatcacattccccagagcatggtaatggcattctttaaatttggtc |
114 |
Q |
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| T |
5050627 |
aagaacagagaacatgtagacaaccccaaaccggaaaaggaagattctccttttcatcacattccccagagcatggtaatggcattctttaaatttggtc |
5050726 |
T |
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| Q |
115 |
caaatttccttgccaa |
130 |
Q |
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| T |
5050727 |
caaatttccttgccaa |
5050742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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