View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_high_10 (Length: 572)
Name: NF12039_high_10
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 29 - 554
Target Start/End: Original strand, 54880801 - 54881317
Alignment:
| Q |
29 |
gagatgaagatccaatgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcataccatcc |
128 |
Q |
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| T |
54880801 |
gagatgaagatccaatgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcataccatcc |
54880900 |
T |
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| Q |
129 |
accgtgccaacaagctcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaataca |
228 |
Q |
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| T |
54880901 |
accgtgccaacaagctcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaataca |
54881000 |
T |
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| Q |
229 |
ccgtcgcatctggatcttttaatattttaaagaatctcatgagtcagatgtcactaatgcaaccacaactctaaccacgttttaaaatggtctttaatta |
328 |
Q |
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| T |
54881001 |
ccgtcgcatctggatcttttaatattttaaagaatctcatgagtcagatgtgactaattcaaccacaactctaaccacgttttaaaatggtctttaatta |
54881100 |
T |
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| Q |
329 |
attaataataaataatatcgtgcgnnnnnnngttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgacct |
428 |
Q |
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| T |
54881101 |
at--------aataatatcttgcg-ttttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgacct |
54881191 |
T |
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| Q |
429 |
tccaatccatggagcaaatgaacatacacagaaacataacaggtttcttctctctggtgttaagctttcaaccaattctttagacccagattcatcatcc |
528 |
Q |
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| T |
54881192 |
tccaatccatggagcaaatcaacatacacagaaacataacaggtttcttctctctggtgttaagctttcaagcaattctttagacccagattcatcatcc |
54881291 |
T |
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| Q |
529 |
accagtattttctctgaagcaagaaa |
554 |
Q |
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| T |
54881292 |
accagtattgtctctgaagcaagaaa |
54881317 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 26846544 - 26846622
Alignment:
| Q |
361 |
ttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
439 |
Q |
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|||||||||||||||| ||||||||||||| ||||||| ||||| || || ||||| ||||||||| |||| ||||||| |
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| T |
26846544 |
ttgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
26846622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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