View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12039_high_14 (Length: 423)

Name: NF12039_high_14
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12039_high_14
NF12039_high_14
[»] chr1 (30 HSPs)
chr1 (35-307)||(6320455-6320728)
chr1 (53-201)||(3377505-3377648)
chr1 (50-132)||(16874667-16874749)
chr1 (50-118)||(46880906-46880974)
chr1 (53-132)||(8301512-8301591)
chr1 (50-201)||(14978801-14978946)
chr1 (50-201)||(17760686-17760834)
chr1 (49-131)||(1096536-1096618)
chr1 (53-121)||(12961012-12961080)
chr1 (53-129)||(41997808-41997884)
chr1 (50-132)||(39642372-39642454)
chr1 (53-132)||(50401439-50401517)
chr1 (50-132)||(44672380-44672462)
chr1 (50-118)||(25486296-25486363)
chr1 (53-132)||(8009796-8009875)
chr1 (50-113)||(14190706-14190769)
chr1 (50-113)||(46912355-46912418)
chr1 (50-132)||(6569671-6569753)
chr1 (50-132)||(21258987-21259069)
chr1 (50-132)||(23220634-23220716)
chr1 (54-132)||(30849398-30849476)
chr1 (50-132)||(45739003-45739085)
chr1 (35-122)||(48319481-48319570)
chr1 (50-128)||(50226555-50226633)
chr1 (53-107)||(51462975-51463029)
chr1 (152-201)||(3377772-3377821)
chr1 (53-98)||(4474858-4474903)
chr1 (75-132)||(14978990-14979047)
chr1 (152-201)||(51250489-51250538)
chr1 (151-199)||(25085650-25085698)
[»] chr2 (31 HSPs)
chr2 (50-201)||(43028798-43028943)
chr2 (50-201)||(14489218-14489363)
chr2 (50-199)||(5470501-5470643)
chr2 (50-201)||(44617903-44618047)
chr2 (50-132)||(25411609-25411691)
chr2 (50-132)||(37431611-37431693)
chr2 (77-201)||(25384-25508)
chr2 (50-129)||(25333569-25333648)
chr2 (49-132)||(27489500-27489583)
chr2 (50-132)||(4925507-4925589)
chr2 (50-132)||(37803191-37803272)
chr2 (53-132)||(32969625-32969704)
chr2 (154-201)||(34679101-34679148)
chr2 (143-201)||(6592728-6592786)
chr2 (50-132)||(14943709-14943791)
chr2 (50-132)||(34760915-34760997)
chr2 (50-132)||(35718713-35718795)
chr2 (53-111)||(43741669-43741727)
chr2 (50-118)||(39918516-39918584)
chr2 (150-201)||(4576800-4576850)
chr2 (31-83)||(36195722-36195776)
chr2 (50-132)||(2609253-2609335)
chr2 (155-201)||(15022842-15022888)
chr2 (50-132)||(23048418-23048500)
chr2 (50-132)||(28719445-28719527)
chr2 (67-132)||(16043203-16043268)
chr2 (53-118)||(18969261-18969326)
chr2 (156-201)||(36715559-36715604)
chr2 (50-118)||(5008452-5008520)
chr2 (50-121)||(15022916-15022988)
chr2 (50-122)||(24472611-24472683)
[»] chr5 (29 HSPs)
chr5 (50-201)||(19131664-19131808)
chr5 (50-201)||(27904647-27904793)
chr5 (31-201)||(3333844-3334011)
chr5 (50-201)||(31080481-31080626)
chr5 (50-132)||(25910791-25910873)
chr5 (50-131)||(2974702-2974783)
chr5 (50-201)||(36798174-36798320)
chr5 (50-131)||(12406204-12406285)
chr5 (50-132)||(20512264-20512346)
chr5 (50-132)||(30604251-30604333)
chr5 (50-201)||(20629908-20630055)
chr5 (50-132)||(9852854-9852936)
chr5 (50-132)||(18403054-18403136)
chr5 (155-201)||(22300605-22300651)
chr5 (31-132)||(16132812-16132915)
chr5 (35-119)||(3999245-3999331)
chr5 (54-201)||(37897886-37898027)
chr5 (53-132)||(40276196-40276275)
chr5 (50-132)||(32391883-32391965)
chr5 (152-201)||(12406045-12406094)
chr5 (151-201)||(6131795-6131845)
chr5 (51-201)||(24405494-24405638)
chr5 (151-201)||(40133139-40133189)
chr5 (152-201)||(19340768-19340817)
chr5 (53-129)||(39574309-39574382)
chr5 (151-214)||(12406300-12406364)
chr5 (50-98)||(22471801-22471849)
chr5 (53-121)||(25363904-25363972)
chr5 (157-201)||(40132908-40132952)
[»] chr3 (33 HSPs)
chr3 (50-201)||(51315648-51315794)
chr3 (31-201)||(44585929-44586096)
chr3 (50-132)||(44436562-44436644)
chr3 (57-132)||(27178318-27178393)
chr3 (50-201)||(54464166-54464312)
chr3 (50-201)||(33329781-33329932)
chr3 (50-132)||(44433228-44433310)
chr3 (65-201)||(38957849-38957981)
chr3 (50-201)||(578577-578721)
chr3 (50-201)||(48348423-48348568)
chr3 (50-122)||(25843443-25843515)
chr3 (50-122)||(35359074-35359146)
chr3 (35-132)||(43747427-43747526)
chr3 (50-201)||(1938321-1938466)
chr3 (54-132)||(20432352-20432431)
chr3 (50-129)||(33447135-33447214)
chr3 (50-113)||(44624711-44624773)
chr3 (56-118)||(4474150-4474212)
chr3 (50-132)||(46226765-46226847)
chr3 (50-132)||(49001778-49001860)
chr3 (50-132)||(54719161-54719243)
chr3 (53-121)||(8024949-8025017)
chr3 (32-83)||(25154298-25154351)
chr3 (50-132)||(28712522-28712604)
chr3 (31-121)||(14340877-14340969)
chr3 (49-122)||(28204649-28204722)
chr3 (50-107)||(33943680-33943737)
chr3 (50-107)||(35494154-35494211)
chr3 (152-201)||(45125099-45125148)
chr3 (50-118)||(3916511-3916579)
chr3 (53-129)||(14856723-14856799)
chr3 (153-201)||(15978952-15979000)
chr3 (53-113)||(49787337-49787397)
[»] chr6 (16 HSPs)
chr6 (50-201)||(30349353-30349498)
chr6 (52-201)||(10727360-10727504)
chr6 (35-132)||(26311551-26311650)
chr6 (50-201)||(33399790-33399934)
chr6 (53-201)||(6036827-6036968)
chr6 (53-132)||(2853582-2853661)
chr6 (57-132)||(26601528-26601603)
chr6 (50-132)||(17532319-17532401)
chr6 (50-132)||(32143326-32143408)
chr6 (60-132)||(18604172-18604244)
chr6 (49-132)||(2808087-2808169)
chr6 (50-120)||(3812820-3812889)
chr6 (50-82)||(11351753-11351785)
chr6 (157-201)||(17248640-17248684)
chr6 (50-130)||(17248706-17248786)
chr6 (50-122)||(20474869-20474941)
[»] chr4 (41 HSPs)
chr4 (50-201)||(51362540-51362689)
chr4 (50-201)||(53312290-53312437)
chr4 (35-132)||(47999597-47999696)
chr4 (50-201)||(10059861-10060009)
chr4 (50-201)||(14449448-14449595)
chr4 (50-132)||(2654133-2654215)
chr4 (50-132)||(12719609-12719691)
chr4 (50-199)||(2016797-2016941)
chr4 (50-122)||(43074752-43074824)
chr4 (50-201)||(20112314-20112459)
chr4 (50-201)||(25909491-25909637)
chr4 (50-113)||(27978778-27978841)
chr4 (50-132)||(1420708-1420790)
chr4 (152-201)||(35615318-35615367)
chr4 (50-132)||(2836967-2837049)
chr4 (50-132)||(21597566-21597648)
chr4 (50-132)||(31553406-31553488)
chr4 (154-201)||(1420539-1420586)
chr4 (50-201)||(6207338-6207486)
chr4 (154-201)||(21957730-21957777)
chr4 (75-201)||(23759565-23759685)
chr4 (50-132)||(29697590-29697671)
chr4 (50-107)||(38829914-38829971)
chr4 (50-131)||(54855373-54855453)
chr4 (51-107)||(53061713-53061769)
chr4 (154-201)||(2017051-2017098)
chr4 (50-117)||(8070708-8070775)
chr4 (50-129)||(8965680-8965759)
chr4 (142-201)||(20118157-20118216)
chr4 (54-121)||(50769442-50769509)
chr4 (50-132)||(23759738-23759820)
chr4 (50-132)||(33167976-33168058)
chr4 (157-214)||(37832963-37833021)
chr4 (50-104)||(49185665-49185719)
chr4 (152-201)||(4796299-4796348)
chr4 (60-105)||(13825975-13826020)
chr4 (56-121)||(14060873-14060938)
chr4 (59-119)||(21322884-21322944)
chr4 (56-132)||(21871557-21871633)
chr4 (56-132)||(21927418-21927494)
chr4 (50-122)||(51371541-51371613)
[»] chr8 (20 HSPs)
chr8 (50-132)||(37813255-37813337)
chr8 (49-121)||(14880414-14880486)
chr8 (53-201)||(41487377-41487519)
chr8 (50-132)||(6807333-6807415)
chr8 (50-132)||(37939979-37940060)
chr8 (52-201)||(29044713-29044855)
chr8 (31-132)||(3676271-3676374)
chr8 (50-132)||(16982775-16982856)
chr8 (50-201)||(30539155-30539300)
chr8 (151-201)||(32071272-32071321)
chr8 (152-201)||(25896994-25897043)
chr8 (54-121)||(45457158-45457226)
chr8 (50-121)||(45177280-45177351)
chr8 (50-132)||(20853444-20853526)
chr8 (159-201)||(27545348-27545390)
chr8 (152-201)||(23702395-23702444)
chr8 (152-201)||(28349568-28349617)
chr8 (87-132)||(29657771-29657816)
chr8 (50-98)||(12278937-12278985)
chr8 (60-132)||(41602550-41602622)
[»] chr7 (22 HSPs)
chr7 (50-197)||(4049714-4049859)
chr7 (50-132)||(18504311-18504393)
chr7 (35-201)||(35250123-35250285)
chr7 (50-132)||(36580439-36580521)
chr7 (156-211)||(15106986-15107041)
chr7 (50-201)||(15347958-15348100)
chr7 (50-132)||(11374132-11374213)
chr7 (50-208)||(18186615-18186769)
chr7 (53-201)||(28785922-28786067)
chr7 (53-132)||(17876237-17876316)
chr7 (50-121)||(36903341-36903412)
chr7 (50-201)||(41243648-41243792)
chr7 (156-201)||(6792061-6792106)
chr7 (53-118)||(45717980-45718045)
chr7 (50-113)||(8073961-8074024)
chr7 (50-132)||(6726419-6726500)
chr7 (50-132)||(15107156-15107238)
chr7 (152-201)||(21505878-21505927)
chr7 (152-201)||(28472394-28472442)
chr7 (152-201)||(47909698-47909747)
chr7 (153-201)||(17931988-17932036)
chr7 (53-117)||(23826102-23826166)
[»] scaffold0248 (1 HSPs)
scaffold0248 (50-201)||(406-553)
[»] scaffold0015 (1 HSPs)
scaffold0015 (50-132)||(76930-77011)
[»] scaffold0025 (2 HSPs)
scaffold0025 (56-132)||(19199-19275)
scaffold0025 (152-201)||(19602-19651)
[»] scaffold0011 (1 HSPs)
scaffold0011 (56-132)||(145421-145497)
[»] scaffold0328 (1 HSPs)
scaffold0328 (53-132)||(9479-9558)
[»] scaffold0062 (1 HSPs)
scaffold0062 (50-132)||(46239-46321)
[»] scaffold0515 (1 HSPs)
scaffold0515 (152-201)||(3643-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (152-201)||(3643-3692)
[»] scaffold0194 (2 HSPs)
scaffold0194 (152-201)||(25155-25204)
scaffold0194 (31-132)||(25043-25145)
[»] scaffold0150 (1 HSPs)
scaffold0150 (53-122)||(9704-9772)
[»] scaffold0854 (1 HSPs)
scaffold0854 (50-98)||(2005-2053)
[»] scaffold0137 (1 HSPs)
scaffold0137 (50-118)||(19995-20063)
[»] scaffold0417 (1 HSPs)
scaffold0417 (49-104)||(9433-9488)
[»] scaffold0016 (1 HSPs)
scaffold0016 (50-132)||(199736-199818)
[»] scaffold0578 (1 HSPs)
scaffold0578 (50-118)||(3157-3225)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 307
Target Start/End: Complemental strand, 6320728 - 6320455
Alignment:
Q  35 tggcaccacacttaatgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtann 134  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||      
T  6320728 tggcacctcacttagtgtcacgtcagcgtagaccgagtcgaaattggtctaaggggtcaaaactaccacagatgcaaaatttaggggacggttttgtatt 6320629  T
Q  135 nnnnnncttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctattagacttaatattatcatcacagaaatataattaa 234  Q
          |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  6320628 ttttttcttcttcttaaggggccaaaatcgcaactttagaaaagttagagggctaaaactgcaattagccttaatattatcatcacagaaatataattaa 6320529  T
Q  235 actactattcaatttcatattcttattctgtat-ctatcatactactaatcaatttgtaattatatgatggcac 307  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  6320528 actactattcaatttcatattcttattctgtatcctctcatactactaatcaatttgtaattatatgatggcac 6320455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 3377648 - 3377505
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaag 152  Q
    ||||||||||||||||||||| ||||||||||  |||| ||||||| ||||| |||||||| |||||||| |||||||||         || |||| | |    
T  3377648 cacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtagttt-----tttttcttagg 3377554  T
Q  153 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  3377553 gggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 3377505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 16874667 - 16874749
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||||||  || | ||||||| |||||||||||||| ||| |||| |||||||||    
T  16874667 tgccacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgccacagatgcaaaacttatggggcggttttgta 16874749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 46880906 - 46880974
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    |||||||||||||||||||||||||||||||| || |  |||||||||| | |||||||||||||||||    
T  46880906 tgccacgtcagcgtagaccgagtcgaaattggtcttacaggtcaaaactgctacagatgcaaaatttag 46880974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 8301512 - 8301591
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||  ||||| ||||||| ||  |||||||||||| ||||||||||||||||||||||  |||||||||    
T  8301512 cacgtcagcgtagattgagtcaaaattggtcttgggggtcaaaactgccacagatgcaaaatttaggggacggttttgta 8301591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 14978946 - 14978801
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||| |||||||||||| | || ||||||||||  |||| |||||||||||||| ||||||| ||||||||  ||||||||         || || |     
T  14978946 tgccacatcagcgtagaccaattcaaaattggcctttggggccaaaactaccacaggtgcaaaacttagggggcagttttgtagtt------tttttttg 14978853  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||  |||||||||||||||| || ||||||| ||||||||||||||||||    
T  14978852 aaggacccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 14978801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 17760834 - 17760686
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    ||||||||||| |||||||||||| ||||||  ||  | || ||||||| ||||| |||||||| ||||||||||||||||||         || ||||     
T  17760834 tgccacgtcagtgtagaccgagtcaaaattgatcttggtggccaaaactgccacatatgcaaaacttagggggtggttttgtagttttt---tttttctt 17760738  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||||||||||||   |||||||| |||||||| |||||||||    
T  17760737 agggggccaaaatcgcaactttgaggaagttagggggctaaagctgctatta 17760686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 1096618 - 1096536
Alignment:
Q  49 atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgt 131  Q
    ||||||||||||||||||||||||| |||||| ||  ||||| ||||||| |||||||||| ||| |||| ||| ||||||||    
T  1096618 atgccacgtcagcgtagaccgagtcaaaattgaccctaggggccaaaactgccacagatgcgaaacttagagggcggttttgt 1096536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 12961012 - 12961080
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    ||||||||||||||||||||| ||||||||||  || | ||||||| |||||| |||||||||||||||    
T  12961012 cacgtcagcgtagaccgagtcaaaattggcctttggagccaaaactgccacagttgcaaaatttagggg 12961080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 41997808 - 41997884
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggtttt 129  Q
    ||||||||||||||||||||| ||||||||||  | || ||||||| |||||||||||||  ||||||| |||||||    
T  41997808 cacgtcagcgtagaccgagtcaaaattggccttggaggccaaaactgccacagatgcaaagcttaggggttggtttt 41997884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 39642372 - 39642454
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||| ||||||| ||||||||||| |||||||| |  |||| ||||||| ||||| |||||||| |||||||| |||||||||    
T  39642372 tgccgcgtcagcatagaccgagtcaaaattggctttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgta 39642454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 50401517 - 50401439
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||| |||||||||||| ||||||||||  |||| |||||||  |||| |||||||| |||||||| |||||||||    
T  50401517 cacgtcagagtagaccgagtcaaaattggcct-tggggccaaaactgtcacaaatgcaaaacttagggggcggttttgta 50401439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 44672462 - 44672380
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||||||| || ||||||  ||  || | ||||||| ||||| |||||||| |||||||| |||||||||    
T  44672462 tgccacgtcagcgtagaccgaatcaaaattgatcttgggcgccaaaactgccacatatgcaaaacttagggggcggttttgta 44672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 25486363 - 25486296
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    |||||||||||||||||||||||| ||||||  || ||||| ||||||  |||||||||||||| ||||    
T  25486363 tgccacgtcagcgtagaccgagtcaaaattgaacttaggggccaaaac-gccacagatgcaaaacttag 25486296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 8009875 - 8009796
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| |||||| ||||||| ||  | ||||||||||  ||||||||||||| || ||| | |||||||||    
T  8009875 cacgtcagcgtagaacgagtcaaaattggtcttggtggtcaaaactgtcacagatgcaaaacttcgggagcggttttgta 8009796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 14190706 - 14190769
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaa 113  Q
    |||||| ||||||||||||||||| |||||||| |  | || ||||||| ||||||||||||||    
T  14190706 tgccacatcagcgtagaccgagtcaaaattggcattggaggccaaaactgccacagatgcaaaa 14190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 46912355 - 46912418
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaa 113  Q
    ||||||||||||||| || ||||| |||||||| | ||||| ||||||| ||| ||||||||||    
T  46912355 tgccacgtcagcgtaaacagagtcaaaattggcattaggggccaaaactgccatagatgcaaaa 46912418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 6569671 - 6569753
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||||||| || ||||||| ||   ||| ||||||| ||||| ||| |||| ||| |||| |||||||||    
T  6569671 tgccacgtcagcgtagaccgaatcaaaattggtcttgagggccaaaactgccacaaatgtaaaacttaaggggcggttttgta 6569753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 21259069 - 21258987
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||||||| ||||||||| ||||| | ||| |||||||||||| ||| |||| ||| |  |||||||| ||||||||    
T  21259069 tgccacttcagcgttgaccgagtcaaaatttgtctagggggtcaaaactgccaaagatccaatacatagggggttgttttgta 21258987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 23220716 - 23220634
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||||||| || ||||||| ||  |||| ||||||  |||||  ||||||| ||| |||| |||||||||    
T  23220716 tgccacgtcagcgtagaccgaatcaaaattggtcttgggggccaaaaccgccacatgtgcaaaacttaaggggcggttttgta 23220634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 30849398 - 30849476
Alignment:
Q  54 acgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||| |||||| |||  ||||||||||   ||| |||||||| ||||||||||||| |||||||  |||||||||    
T  30849398 acgtcagcatagaccaagttaaaattggccttgtgggccaaaactatcacagatgcaaaacttaggggacggttttgta 30849476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 45739085 - 45739003
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||| ||| ||||||||||| |||||| | |  |||| ||||||| ||| |||||||||| ||| |||| |||||||||    
T  45739085 tgccacgttagcatagaccgagtcaaaattgactttgggggccaaaactgccatagatgcaaaacttaaggggcggttttgta 45739003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 48319570 - 48319481
Alignment:
Q  35 tggcaccacactta--atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    ||||||| ||||||  ||||||||||||||| ||  ||||| |||||| |||  ||||||||||||  || |||||||||||||| ||||    
T  48319570 tggcacctcacttaggatgccacgtcagcgttgatagagtcaaaattgaccttgggggtcaaaactgtcatagatgcaaaatttatgggg 48319481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 50226555 - 50226633
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttt 128  Q
    |||||||||||||||||||||||| | ||| ||||  |||| ||||||| | |||| ||||||| |||| ||| |||||    
T  50226555 tgccacgtcagcgtagaccgagtcaatattagccttcggggccaaaactgctacaggtgcaaaacttagagggcggttt 50226633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 51462975 - 51463029
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagat 107  Q
    ||||||||||| ||||||||| ||||||| ||| |||||||||||| ||| ||||    
T  51462975 cacgtcagcgttgaccgagtcaaaattggtctagggggtcaaaactgccaaagat 51463029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 3377772 - 3377821
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||| ||||||| |  ||||||| ||||||||||||||||||    
T  3377772 ggggccaaaatcacaactttgggaaagttagggggctaaaactgctatta 3377821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 4474903 - 4474858
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaact 98  Q
    ||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  4474903 cacgtcagcgttgaccgagttaaaattggtctaaggggtcaaaact 4474858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 14978990 - 14979047
Alignment:
Q  75 aaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||  |||  ||||||||| |||| |||||||||||||||| |||||||||    
T  14978990 aaattggccttggggtccaaaactactacagttgcaaaatttagggggcggttttgta 14979047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 51250538 - 51250489
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||  | ||||||| |||||||||||| |||||    
T  51250538 ggggccaaaatcgcaactttgaaaaagttagggggctaaaactgttatta 51250489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 25085650 - 25085698
Alignment:
Q  151 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctat 199  Q
    ||||||||||||| ||||||| || ||||||| ||||||||| ||||||    
T  25085650 aggggccaaaatcacaactttggaaaagttagggggctaaaattgctat 25085698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 43028943 - 43028798
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| |||||||||  || || ||||||| |||||||||||||| |||||||| |||||||||         || ||||     
T  43028943 tgccacgtcagcgtagaccgagtcaaaattggccctagaggccaaaactgccacagatgcaaaacttaggggg-ggttttgtagttt-----tttttctt 43028850  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | |||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  43028849 agggggccaaaatcgcaactttggagaagttagggggctaaaactgctatta 43028798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 14489363 - 14489218
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||| ||||||||||||||||| ||||||| ||  | |||||||||| |||||| ||||||| |||||||| |||||||||         || ||||     
T  14489363 tgccacatcagcgtagaccgagtcaaaattggtcttggaggtcaaaactgccacaggtgcaaaacttagggggcggttttgtaatt------tttttctt 14489270  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||| ||||||| |  ||||||||||||||||||||||||||    
T  14489269 aaggggccaaaatcacaacttttggaaagttagagggctaaaactgctatta 14489218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 5470501 - 5470643
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||| ||||||||||| ||||||||||  |||| ||||||| ||||||||| |||| ||| |||| |||||||||         || || |     
T  5470501 tgccacgtcagcatagaccgagtcaaaattggccttgggggccaaaactgccacagatgtaaaacttaaggggcggttttgtagt-------tttttttt 5470593  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctat 199  Q
    | ||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  5470594 agggggccaaaatcgcaactttaggaaagttagggggctaaaactgctat 5470643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 44617903 - 44618047
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||| ||  |||| ||||||| ||||| |||||||| |||||||| |||||||||         || ||||     
T  44617903 tgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtaat-------tttttctt 44617995  T
Q  150 aaggggccaaaatcgcaactt-tagagaagttagagggctaaaactgctatta 201  Q
    ||||| ||||||||||||||| | || ||||||||||| ||||||||||||||    
T  44617996 aagggaccaaaatcgcaacttcttga-aagttagagggttaaaactgctatta 44618047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 25411691 - 25411609
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||| ||||||||||| |||||||  |  ||||| |||||| |||||||||||||| |||||||| |||||||||    
T  25411691 tgccacgtcagcatagaccgagtcaaaattggtattgggggtgaaaactgccacagatgcaaaacttagggggcggttttgta 25411609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 37431693 - 37431611
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||| ||||| |||||||| |||| ||| | |||||||    
T  37431693 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagtgggcgattttgta 37431611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 25508 - 25384
Alignment:
Q  77 attggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaaggggccaaaatcgcaactttagaga 176  Q
    ||||||||  |||||||||||| |||||| ||||||| |||||||| |||||||||        |||||||| | ||||||||||||| |||||| |  |    
T  25508 attggccttgggggtcaaaactgccacaggtgcaaaacttagggggcggttttgtagtttttttcttcttcttagggggccaaaatcgtaactttgggaa 25409  T
Q  177 agttagagggctaaaactgctatta 201  Q
    |||||| |||| ||||||| |||||    
T  25408 agttagggggcaaaaactgttatta 25384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 25333648 - 25333569
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggtttt 129  Q
    ||||||||||||||||||| |||| ||||||||||  | |  ||||||| |||||| ||||||| |||||||||||||||    
T  25333648 tgccacgtcagcgtagaccaagtcaaaattggccttggagaccaaaactgccacaggtgcaaaacttagggggtggtttt 25333569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 27489583 - 27489500
Alignment:
Q  49 atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||| |||||||| |||||| |||  | || ||||||| |||||||||||||| |||||||||  |||||||    
T  27489583 atgccacgtcagcgtaaaccgagtcaaaattgcccttggaggccaaaactgccacagatgcaaaagttagggggtaattttgta 27489500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 4925589 - 4925507
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||| ||  | ||||||| || ||||||||||||| ||||| |||||||| |||||||  |||||||||    
T  4925589 tgccacgtcagcgtagacagaaccaaaattggtcttaggggtcaaaactgccacatatgcaaaacttaggggacggttttgta 4925507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 37803272 - 37803191
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| |||||| | |  |||||||||||| ||||| |||||||| ||||| || |||||||||    
T  37803272 tgccacgtcagcgtagaccgagtcaaaattgacat-tggggtcaaaactgccacaaatgcaaaacttaggaggcggttttgta 37803191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 32969704 - 32969625
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||||||| ||||||||||  || | ||||||| ||||| ||| |||| |||||||| | |||||||    
T  32969704 cacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgccacaaatgaaaaacttagggggcgattttgta 32969625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 34679148 - 34679101
Alignment:
Q  154 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  34679148 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 34679101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 6592786 - 6592728
Alignment:
Q  143 tcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||| | |||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  6592786 tcttcttagggggtcaaaatcgcaactttggaaaagttagggggctaaaactgctatta 6592728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 14943709 - 14943791
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||||||||||||||||| ||||| ||||  |||| ||||| | |||||| ||||||| |||| ||| |||||||||    
T  14943709 tgccacatcagcgtagaccgagtcaaaattagccttgggggccaaaaatgccacaggtgcaaaacttagagggcggttttgta 14943791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 34760997 - 34760915
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||| ||||||  ||| ||||||| ||  |||| ||||||| ||||| |||||||| |||||||| |||||||||    
T  34760997 tgccacgtcagcatagaccacgtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggggcggttttgta 34760915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 35718795 - 35718713
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||| ||||||| ||||| ||||||||||  | || ||||||| ||||||||||||||| ||||||  |||||||||    
T  35718795 tgccacatcaccgtagactgagtcaaaattggccttggaggccaaaactgccacagatgcaaaatgtaggggacggttttgta 35718713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 43741669 - 43741727
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaa 111  Q
    ||||||||||| ||||||||| ||||||| ||| |||||||||||| ||| ||||||||    
T  43741669 cacgtcagcgttgaccgagtcaaaattggtctagggggtcaaaactgccaaagatgcaa 43741727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 39918584 - 39918516
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    ||||||||||||| |||||||||| ||||||||||  |||| ||||||  ||||| |||||||| ||||    
T  39918584 tgccacgtcagcgaagaccgagtcaaaattggccttgggggccaaaacagccacatatgcaaaacttag 39918516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 4576800 - 4576850
Alignment:
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||||| || ||||||| || |||||||||||||||    
T  4576800 aaggggccaaaatcgcaactttgga-aagttaggggtctaaaactgctatta 4576850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 36195722 - 36195776
Alignment:
Q  31 cacatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcc 83  Q
    ||||||||||| ||||||   |||||||||||||||||||||||| |||||||||    
T  36195722 cacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcc 36195776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 2609253 - 2609335
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||||||||||||||||| ||||||  ||  |||||||||||| ||||| ||| |||| ||| |||| | |||||||    
T  2609253 tgccacatcagcgtagaccgagtcaaaattgatcttgggggtcaaaactgccacatatgtaaaacttatggggcgattttgta 2609335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 15022888 - 15022842
Alignment:
Q  155 gccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||| ||||||| || ||||||| ||||||||||||||||||    
T  15022888 gccaaaatcacaactttcgaaaagttagggggctaaaactgctatta 15022842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 23048500 - 23048418
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| ||||||||| |||||||  || |||| ||||||| ||| |||| ||| |  |||||||| ||||||||    
T  23048500 tgccacgtcagcgttgaccgagtcaaaattggtttagggggccaaaactgccaaagatccaatacatagggggttgttttgta 23048418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 28719527 - 28719445
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| ||||||| ||| |||| ||| |  |||||||  ||||||||    
T  28719527 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaactgccaaagatccaatacatagggggctgttttgta 28719445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 16043203 - 16043268
Alignment:
Q  67 ccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||| ||||||||||  |||| ||||||| ||||||||||||||  ||||||| |||| ||||    
T  16043203 ccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacatagggggcggttctgta 16043268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 18969261 - 18969326
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    ||||||||||||| || |||| ||||||||||  |||||||||||  ||||| || ||||||||||    
T  18969261 cacgtcagcgtaggcctagtcaaaattggccttgggggtcaaaacagccacaaatacaaaatttag 18969326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 36715559 - 36715604
Alignment:
Q  156 ccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||||    
T  36715559 ccaaaatcgcaactttaaaaaagttagggagctaaaactgctatta 36715604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 5008452 - 5008520
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    |||||||||||||||||||||||| |||||| |||   ||| ||||| | ||||| |||||||| ||||    
T  5008452 tgccacgtcagcgtagaccgagtcaaaattgaccttgagggccaaaattgccacaaatgcaaaacttag 5008520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 15022988 - 15022916
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtc-aaaactaccacagatgcaaaatttagggg 121  Q
    ||||| |||||||||||| ||||| || |||||||  |||| | |||||| ||||| ||||||||||||||||    
T  15022988 tgccatgtcagcgtagactgagtcaaatttggccttggggggccaaaactgccacaaatgcaaaatttagggg 15022916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 24472611 - 24472683
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||| || |||||| ||||| |||||||| |  | || ||||||| |||||||||||||| ||||||||    
T  24472611 tgccacgttagtgtagacggagtcaaaattggcattggcggccaaaactgccacagatgcaaaacttaggggg 24472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 19131664 - 19131808
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||||||  |||| |||||||  ||||||||||||| |||||||| |||||||||         || || |     
T  19131664 tgccacgtcagcgtagaccgagtcaaaattggccttcggggccaaaactgtcacagatgcaaaacttagggggcggttttgtagt-------tttttttt 19131756  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  19131757 agggggcaaaaatcgcaactttagaaaagttagaggactaaaactgctatta 19131808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 27904647 - 27904793
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||| ||  |||| ||||||| |||||  ||||||| |||||||| |||||||||         || ||||     
T  27904647 tgccacgtcagcgtagaccgagtcaaaattggtcttgggggacaaaactgccacaagtgcaaaacttagggggcggttttgtagttt-----tttttctt 27904741  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  27904742 acggggccaaaatcgcaactttgaaaaagttagagggctaaaactgctatta 27904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 3333844 - 3334011
Alignment:
Q  31 cacatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttt 128  Q
    ||||||||||| ||||||   |||||||||||||||||||||||| |||||| |||  |||| ||||||| ||||| |||||||| ||| || | |||||    
T  3333844 cacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacatatgcaaaacttatggagcggttt 3333943  T
Q  129 tgtannnnnnnncttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||         ||||||| | |||||||||||||||||||| || ||||||| ||||||||||| ||||||    
T  3333944 tgtagttt-----ttcttcttagggggccaaaatcgcaactttggaaaagttagggggctaaaactactatta 3334011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 31080626 - 31080481
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||| ||||||||||  ||||||||||  |||| ||||||| |||||||||||||| ||||||||||||||||||         || || |     
T  31080626 tgccacgtcagcatagaccgagttaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggtggttttgtagtt------tttttttt 31080533  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | | || ||||||||||||||| || |||||||||||||||||||| |||||    
T  31080532 aggaggtcaaaatcgcaactttggaaaagttagagggctaaaactgatatta 31080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 25910873 - 25910791
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| |||||| |||  |||| ||||||| |||||| |||||||||||| |||||||||||||    
T  25910873 tgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacaggtgcaaaatttagagggtggttttgta 25910791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 2974783 - 2974702
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgt 131  Q
    |||||||||||||||||||||||| |||||||| |  |||| ||||||| |||||||||||||| |||||||| ||||||||    
T  2974783 tgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaaactgccacagatgcaaaacttagggggcggttttgt 2974702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 36798320 - 36798174
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    ||||||||||| |||||||||||| ||||||| ||  |||| ||||||| |||||||||||||| ||||||||||||||||||         || ||||     
T  36798320 tgccacgtcagtgtagaccgagtc-aaattggtcttgggggccaaaactgccacagatgcaaaacttagggggtggttttgtagtttt----tttttctt 36798226  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||| |||||||| || ||||||  || |||||||||||||||    
T  36798225 agggggccaaaattgcaactttggaaaagttaagggtctaaaactgctatta 36798174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 12406204 - 12406285
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgt 131  Q
    |||||||||||||||||| ||||| ||||||||||  |||| ||||||| ||||||||| |||| |||||||| ||||||||    
T  12406204 tgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgccacagatgtaaaacttagggggcggttttgt 12406285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 20512346 - 20512264
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||| || ||||||||||||||| ||||||| ||  ||||||||||||||||||| ||||||| ||||||||  ||||||||    
T  20512346 tgccatgttagcgtagaccgagtcaaaattggtcttgggggtcaaaactaccacaggtgcaaaacttagggggcagttttgta 20512264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 30604251 - 30604333
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||| ||||| |||||||||||  ||  ||||||| |||||| ||||||| |||||||| |||||||||    
T  30604251 tgccacgtcagcgtagacagagtcaaaattggcctacaggtgcaaaactgccacaggtgcaaaacttagggggcggttttgta 30604333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 20629908 - 20630055
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    ||||||||||||||||| |||||| ||||||| |   | || ||||||| ||||| |||||||| |||||||| |||||||||         || ||||     
T  20629908 tgccacgtcagcgtagatcgagtcaaaattggtcctggaggccaaaacttccacaaatgcaaaacttagggggcggttttgtagttt-----tttttctt 20630002  T
Q  150 aaggggccaaaatcgcaactttagagaagttagag-ggctaaaactgctatta 201  Q
    |||||||||||||| ||||||| || ||||||| | |||||||||||||||||    
T  20630003 aaggggccaaaatcacaactttggaaaagttagggaggctaaaactgctatta 20630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 9852936 - 9852854
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||| | |||| ||||||||||  || | ||||||| |||||||||||||| |||||||| | |||||||    
T  9852936 tgccacgtcagcgtagatcaagtcaaaattggccttgggagccaaaactgccacagatgcaaaacttagggggcgattttgta 9852854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 18403136 - 18403054
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||| ||||||| ||||| ||||||| ||  |||||||||||| ||| |||||||||| |||||| ||| |||||||    
T  18403136 tgccacgtcaacgtagactgagtcaaaattggtcttgggggtcaaaactgccagagatgcaaaacttagggagtgattttgta 18403054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 22300651 - 22300605
Alignment:
Q  155 gccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  22300651 gccaaaatcgcaactttagaaaagttagagggctaaaactactatta 22300605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 16132915 - 16132812
Alignment:
Q  31 cacatggcaccacactta--atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttt 128  Q
    ||||||||||| ||||||  ||||||| |||||||||||  |||| ||||||||||  |||  ||||||| ||| || ||||||| |||||||| |||||    
T  16132915 cacatggcacctcacttaggatgccacatcagcgtagacaaagtcaaaattggccttggggaccaaaactgccataggtgcaaaacttagggggcggttt 16132816  T
Q  129 tgta 132  Q
    ||||    
T  16132815 tgta 16132812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 3999245 - 3999331
Alignment:
Q  35 tggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagg 119  Q
    ||||||| |||||||  ||||||||||||||||||| |||| ||||||||||  |||| ||||||| ||||| ||| |||| |||||    
T  3999245 tggcacctcacttaaggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgccacatatgtaaaacttagg 3999331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 37897886 - 37898027
Alignment:
Q  54 acgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaagg 153  Q
    |||||||| ||||||||||| ||||||| ||  | || ||||||| ||||| |||||||| |||||||  |||||||||         || |||| | ||    
T  37897886 acgtcagcatagaccgagtcaaaattggtcttggaggccaaaactgccacatatgcaaaacttaggggc-ggttttgtagttt-----tttttcttaggg 37897979  T
Q  154 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||  | ||||||| ||||||||||||||||||    
T  37897980 ggccaaaatcgcaactttgaaaaagttagggggctaaaactgctatta 37898027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 40276196 - 40276275
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||| ||| ||||| ||||  |||||||||| | ||||| |||||||| |||||||  |||||||||    
T  40276196 cacgtcagcgtagaccgggtcaaaattagccttgggggtcaaaattgccacatatgcaaaacttaggggacggttttgta 40276275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 32391883 - 32391965
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||| ||  |  |||||||||  |||| |||||||| ||| |||| |||||||||    
T  32391883 tgccacgtcagcgtagaccgagtcaaaattggtcttggatgtcaaaactgtcacacatgcaaaacttaaggggcggttttgta 32391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 12406094 - 12406045
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  12406094 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 12406045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 6131795 - 6131845
Alignment:
Q  151 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||||||  |||||||   ||||||||||||||||    
T  6131795 aggggccaaaatcgcaactttaggaaagttaggtagctaaaactgctatta 6131845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 24405638 - 24405494
Alignment:
Q  51 gccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctca 150  Q
    ||||||| ||| ||||||||||| ||||||||| | |||| ||||||| ||| |||||||||| ||||  || |||||||||         || ||||||    
T  24405638 gccacgttagcatagaccgagtcaaaattggcc-atggggccaaaactgccaaagatgcaaaacttagttggcggttttgtagttt-----tttttctca 24405545  T
Q  151 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
     || | |||||||||||||||  | ||||||| || |||||||||||||||    
T  24405544 gggagtcaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 24405494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 40133139 - 40133189
Alignment:
Q  151 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||| |  ||||||| ||||||||| ||||||||    
T  40133139 aggggccaaaatcgcaactttgggaaagttagggggctaaaattgctatta 40133189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 19340817 - 19340768
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||| ||||||||||| ||| || ||||||| ||||||||||||||||||    
T  19340817 ggggtcaaaatcgcaattttggaaaagttagggggctaaaactgctatta 19340768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 39574382 - 39574309
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggtttt 129  Q
    ||||||||||||||||||||| ||||||| ||  |||| ||||||| ||||  |||||||| |||||||||| ||||    
T  39574382 cacgtcagcgtagaccgagtc-aaattggtcttgggggccaaaactgccac--atgcaaaacttagggggtgatttt 39574309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 12406300 - 12406364
Alignment:
Q  151 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatt-agacttaatattat 214  Q
    ||||||||||||| |||||||  | ||||||| ||||||||| ||||||| || |||||||||||    
T  12406300 aggggccaaaatctcaactttgaaaaagttagggggctaaaattgctattaagccttaatattat 12406364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 22471801 - 22471849
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaact 98  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| |||||||    
T  22471801 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaact 22471849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 25363972 - 25363904
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    |||||||||||||||||| || |||||| | |  |||| |||||||||||||  ||||||| |||||||    
T  25363972 cacgtcagcgtagaccgaatcaaaattgacttttggggccaaaactaccacaattgcaaaacttagggg 25363904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 40132952 - 40132908
Alignment:
Q  157 caaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||  | |||||||||| |||||||||||||||    
T  40132952 caaaatcgcaactttgaaaaagttagaggactaaaactgctatta 40132908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 51315648 - 51315794
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||| |||||| ||||||| |||||||| |||||||||         || ||||     
T  51315648 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaggtgcaaaacttagggggcggttttgtagttt-----tttttctt 51315742  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  51315743 agggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 51315794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 44585929 - 44586096
Alignment:
Q  31 cacatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttt 128  Q
    ||||||||||| ||||||   |||||||||||||||||||||||| |||||||||   |||| ||||||| ||||||| |||||| |||||||| |||||    
T  44585929 cacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccgtgggggccaaaactgccacagaagcaaaacttagggggcggttt 44586028  T
Q  129 tgtannnnnnnncttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||         || |||| | |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  44586029 tgtagttt-----tttttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 44586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 44436562 - 44436644
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||| |||||||||||||| |||||||| |||||||||    
T  44436562 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcggttttgta 44436644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 27178318 - 27178393
Alignment:
Q  57 tcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||| |||| |||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27178318 tcagcgtagaccaagtcaaaattggcattgggggtcaaaactaccacagatgcaaaacttagggggtggttttgta 27178393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 54464312 - 54464166
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||| ||||||||||||||| |||||| |||  |||||||||||| ||||| |||||||| |||||||   ||||||||        ||| ||||     
T  54464312 tgccacgtgagcgtagaccgagtcaaaattgaccttgggggtcaaaactgccacatatgcaaaacttaggggacagttttgta-----gttctttttctt 54464218  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||  |||||||| ||||||||| ||||||| || |||||||||||||||    
T  54464217 aagggatcaaaatcgtaactttagaaaagttaggggactaaaactgctatta 54464166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 33329781 - 33329932
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||| ||  |||| ||||||| ||||| |||||| | |||||||  |||||||||         |||||||     
T  33329781 tgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgccacaaatgcaatacttaggggacggttttgtagttttttttttcttctt 33329880  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||||||||| || |  ||||| | ||| ||||||||||||||    
T  33329881 agggggccaaaatcgcaacgttgggaaagttggggggttaaaactgctatta 33329932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 44433228 - 44433310
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||||||||||||| ||| ||||||||||  |||| ||||||| ||||| |||||||| |||||||| |||||||||    
T  44433228 tgccacatcagcgtagaccgggtcaaaattggccttgggggccaaaactgccacatatgcaaaacttagggggcggttttgta 44433310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 38957981 - 38957849
Alignment:
Q  65 gaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaaggggccaaaatcg 164  Q
    ||||||||| ||||||||||  |||| ||||||| ||||| |||||||| |||||||| |||||||||         || |||| || ||||||||||||    
T  38957981 gaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtagtttt----tttttcttaaagggccaaaatcg 38957886  T
Q  165 caactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||| | || ||||  |||||||||||||||||    
T  38957885 caactttaaaaaaattaggaggctaaaactgctatta 38957849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 578577 - 578721
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||| ||||||||||| ||||||||||  |||| |||||||||||||| || |||| |||||||  |||||||||         || ||||     
T  578577 tgccacgtcagcatagaccgagtcaaaattggccttgggggccaaaactaccacaggtgaaaaacttaggggc-ggttttgtagttt-----tttttctt 578670  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | |||||||||||||||||||| || |||||||  ||||||||||| |||||    
T  578671 a-ggggccaaaatcgcaactttggaaaagttaggaggctaaaactgatatta 578721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 48348423 - 48348568
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||| ||  |||||||||||| ||||| |||||||| ||| |||| | |||||||         || ||||     
T  48348423 tgccacgtcagcgtagaccgagtcaaaattgggct-tggggtcaaaactgccacatatgcaaaacttaaggggcgattttgtagtta-----tttttctt 48348516  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    || || ||||||||||||||||| | ||||||| ||| ||||||| ||||||    
T  48348517 aaaggaccaaaatcgcaactttaaaaaagttagggggataaaactactatta 48348568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 25843515 - 25843443
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||||||||||||| | ||| ||||||||||  |||  ||||||| |||||||||||||| ||||||||    
T  25843515 tgccacgtcagcgtagactgggtcaaaattggccttggggaccaaaactgccacagatgcaaaacttaggggg 25843443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 35359146 - 35359074
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||||||||||||||||||| |||||| | | ||||| ||||||| |||||  ||||||| ||||||||    
T  35359146 tgccacgtcagcgtagaccgagtcaaaattgacattaggggccaaaactgccacatgtgcaaaaattaggggg 35359074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 43747427 - 43747526
Alignment:
Q  35 tggcaccacactta--atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||| ||||||  ||||||||||||||||||||||||| ||||||  |   |||| ||||||| ||| | |||||||| |||||||| |||||||||    
T  43747427 tggcacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgatcgtgggggccaaaactgccataaatgcaaaacttagggggcggttttgta 43747526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 1938466 - 1938321
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    ||||| |||||||||||||||||| |||||| | |   ||| |||||||||||||| ||||||| ||| |||| |||||||||         |||||| |    
T  1938466 tgccatgtcagcgtagaccgagtcaaaattgactttgtgggccaaaactaccacaggtgcaaaacttaaggggcggttttgtaggtt-----ttcttc-c 1938373  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
     |||||||||| |||||| |||||| ||||||  || |||||||||||||||    
T  1938372 taggggccaaagtcgcaattttagaaaagttaagggactaaaactgctatta 1938321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 20432352 - 20432431
Alignment:
Q  54 acgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatg-caaaatttagggggtggttttgta 132  Q
    ||||||||||||||| |||| |||||| |||  |||||||||||| |||||||||  |||| |||||||||| |||||||    
T  20432352 acgtcagcgtagaccaagtcaaaattgtccttgggggtcaaaactgccacagatgtaaaaacttagggggtgattttgta 20432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 33447135 - 33447214
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggtttt 129  Q
    |||||||||||||| ||||||||| ||||||| ||| |||||||||||| ||| |||| ||| |  |||||||| |||||    
T  33447135 tgccacgtcagcgttgaccgagtcaaaattggtctagggggtcaaaactgccaaagatccaatacatagggggttgtttt 33447214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 44624773 - 44624711
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaa 113  Q
    |||||||||||||||||||||||| ||||||||||  |||  ||||||| ||||||||||||||    
T  44624773 tgccacgtcagcgtagaccgagtcaaaattggcct-tgggaccaaaactgccacagatgcaaaa 44624711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 4474212 - 4474150
Alignment:
Q  56 gtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    ||||||||||||||| || ||||||| || ||||||||||||| ||||| |||||||| ||||    
T  4474212 gtcagcgtagaccgaatcaaaattggtcttaggggtcaaaactgccacaaatgcaaaacttag 4474150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 46226847 - 46226765
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||| |||||||  |||||||| |  |||| ||||||| |||||| |||||||  ||||||||||| |||||    
T  46226847 tgccacgtcagcgtataccgagttaaaattggcatcgggggccaaaactgccacaggtgcaaaacatagggggtggtattgta 46226765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 49001860 - 49001778
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||||||||  || |||| ||| |  |||||||| ||||||||    
T  49001860 tgccacgtcagcgttgaccgagtcaaaattggtctagggggtcaaaactgtcaaagatccaatacatagggggttgttttgta 49001778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 54719161 - 54719243
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| |||||||| |  |||| |||| ||   ||| |||||||| |||||||| |||||||||    
T  54719161 tgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaacctggtacatatgcaaaacttagggggcggttttgta 54719243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 8024949 - 8025017
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    ||||||||||||||||||||  ||||||| ||  | || ||||||||||||| |||||||| |||||||    
T  8024949 cacgtcagcgtagaccgagttaaaattggtcttggaggccaaaactaccacatatgcaaaacttagggg 8025017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 25154351 - 25154298
Alignment:
Q  32 acatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcc 83  Q
    |||||||||| |||||||  ||||||||||||||||| |||||| |||||||||    
T  25154351 acatggcacctcacttaaggtgccacgtcagcgtagatcgagtcaaaattggcc 25154298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 28712604 - 28712522
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||| |||||||||||| || |||||||  || |  |||||| | |||||||||||| |||||||| | |||||||    
T  28712604 tgccacgtcagtgtagaccgagtcaaagttggccttgggtgctaaaactgctacagatgcaaaacttagggggcgattttgta 28712522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 14340877 - 14340969
Alignment:
Q  31 cacatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    |||||| |||| |||||||  ||||| || ||||||||||||||| ||||| || |  |||| ||||||| ||||| |||||||| |||||||    
T  14340877 cacatgacacctcacttaacctgccatgttagcgtagaccgagtcaaaattagcgttgggggccaaaactgccacaaatgcaaaacttagggg 14340969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 28204649 - 28204722
Alignment:
Q  49 atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||||||| |||||||||||| |||||||| |  | || ||||||||||||| || ||||| ||| ||||    
T  28204649 atgccacgtcagtgtagaccgagtcaaaattggcattggaggccaaaactaccacaaatacaaaacttaagggg 28204722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 33943737 - 33943680
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagat 107  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| ||||||| ||| ||||    
T  33943737 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaactgccaaagat 33943680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 35494211 - 35494154
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagat 107  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| ||||||| ||| ||||    
T  35494211 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaactgccaaagat 35494154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 45125148 - 45125099
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||| || ||| ||||||||||||| ||| ||||    
T  45125148 ggggccaaaatcgcaacttttgaaaagatagagggctaaaagtgcaatta 45125099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 3916579 - 3916511
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    |||||||| || |||||||||||| |||||| | |  |||| ||||||| |||||||||||||| ||||    
T  3916579 tgccacgttagtgtagaccgagtcaaaattgactttgggggccaaaactgccacagatgcaaaacttag 3916511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 14856723 - 14856799
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggtttt 129  Q
    |||||||||||||||||| || |||||| | |  |||| |||||||  ||||  ||||||||||||||| |||||||    
T  14856723 cacgtcagcgtagaccgaatcaaaattgacattgggggccaaaactggcacatgtgcaaaatttaggggatggtttt 14856799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 15978952 - 15979000
Alignment:
Q  153 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||| |||||| ||||||  ||||||||||| ||||||    
T  15978952 gggccaaaatcgcaattttagaaaagttacggggctaaaactactatta 15979000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 49787397 - 49787337
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaa 113  Q
    ||||||||||||||||||||| |||||| | |  | || ||||||| ||||||||||||||    
T  49787397 cacgtcagcgtagaccgagtcaaaattgactttggaggccaaaactgccacagatgcaaaa 49787337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 30349498 - 30349353
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||| |||||||||||||  |||||||||  ||||||||||||||||||||||||||| ||| |||| |||||||||         || ||||     
T  30349498 tgccacgtcaacgtagaccgagtcataattggccttgggggtcaaaactaccacagatgcaaaacttaaggggcggttttgtagtt------tttttctt 30349405  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | |||  ||||||||||||||| |  ||||||||||||||||||||||||||    
T  30349404 aggggctcaaaatcgcaactttgggaaagttagagggctaaaactgctatta 30349353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 10727360 - 10727504
Alignment:
Q  52 ccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaa 151  Q
    ||||||||||||||| | |||| ||||||||||  |||| ||||||| |||||||||||||| |||||||| |||||||||         || |||| |     
T  10727360 ccacgtcagcgtagatcaagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcggttttgtagttt-----tttttcttag 10727454  T
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||| ||||||| || ||||||| ||||||||||||||||||    
T  10727455 ggggccaaaatcacaactttggaaaagttagggggctaaaactgctatta 10727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 26311551 - 26311650
Alignment:
Q  35 tggcaccacactta--atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||| ||||||  ||||||||||||||||||||||||| |||||| |||  |||| ||||||| ||||| |||||||| ||| ||||||||||||||    
T  26311551 tggcacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacatatgcaaaacttaaggggtggttttgta 26311650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 33399934 - 33399790
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| |||||| ||| ||||| ||||||| ||||| ||| |||| ||||||   |||||||||         || ||||     
T  33399934 tgccacgtcagcgtagaccgagtcaaaattgaccttaggggccaaaactgccacaaatgtaaaacttagggtccggttttgtagtt------tttttctt 33399841  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |  ||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  33399840 agagggccaaaatcgcaactttggaaaagttag-gggctaaaactgctatta 33399790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 6036827 - 6036968
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaag 152  Q
    ||||||||| || ||| |||| |||||||| |  |||||||||||| ||||| |||||||| |||||||   ||||||||         ||||||| | |    
T  6036827 cacgtcagcataaaccaagtcaaaattggctttgggggtcaaaactgccacatatgcaaaacttaggggacagttttgtagtt------ttcttcttagg 6036920  T
Q  153 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
     ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  6036921 aggccaaaatcgcaactttagaaaagttag-gggctaaaactgctatta 6036968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 2853582 - 2853661
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||  ||||| ||||||||||  |||| ||||||| ||||| ||| |||| |||||||| |||||||||    
T  2853582 cacgtcagcgtagaatgagtcaaaattggccttgggggccaaaactgccacatatgaaaaacttagggggcggttttgta 2853661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 26601603 - 26601528
Alignment:
Q  57 tcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||| ||||||| ||  |||  |||| ||  ||||||||||||| ||||||||||||||||||    
T  26601603 tcagcgtagaccgagtcaaaattggtcttggggaccaaagctgtcacagatgcaaaacttagggggtggttttgta 26601528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 17532401 - 17532319
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||| |||| ||||||||||||| ||| |||| | ||||| ||||||| |||||| ||||||| ||| |||| |||||||||    
T  17532401 tgccatgtcatcgtagaccgagtcaaaactggctttaggggccaaaactgccacaggtgcaaaacttaaggggcggttttgta 17532319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 32143408 - 32143326
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||| ||||||||||||| ||||||| ||  |||| ||||||| |||||| ||||||| ||| |||| |||||||||    
T  32143408 tgccacatcaacgtagaccgagtcaaaattggtcttgggggccaaaactgccacaggtgcaaaacttaaggggcggttttgta 32143326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 18604244 - 18604172
Alignment:
Q  60 gcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||| |||||||||||||||||||||  ||| ||||||| ||||||  |||||| || ||||| |||||||||    
T  18604244 gcgttgaccgagtcgaaattggcctagtgggccaaaactgccacaggggcaaaactttgggggcggttttgta 18604172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 2808087 - 2808169
Alignment:
Q  49 atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||| ||||||||||| |  |||||| | |  |||||||||||||||| ||||||||||||| |||| ||||||||||    
T  2808087 atgccatgtctgcgtagaccgaattaaaattgacattgggggtcaaaactaccaaagatgcaaaattt-ggggatggttttgta 2808169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 3812889 - 3812820
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggg 120  Q
    |||||||||||||||||||| ||| ||||||| ||  |||| ||||||| ||||| |||||||| ||||||    
T  3812889 tgccacgtcagcgtagaccgggtcaaaattggtct-tggggccaaaactgccacatatgcaaaacttaggg 3812820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 11351785 - 11351753
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggc 82  Q
    |||||||||||||||||||||||| ||||||||    
T  11351785 tgccacgtcagcgtagaccgagtcaaaattggc 11351753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 17248684 - 17248640
Alignment:
Q  157 caaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||| | |||||||  |||||||||||||||||    
T  17248684 caaaatcgcaactttaaaaaagttaggaggctaaaactgctatta 17248640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 17248786 - 17248706
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttg 130  Q
    |||||||||| |||||||||| || ||||||| || | ||| |||||||  | ||||||||||| |||| ||| |||||||    
T  17248786 tgccacgtcaacgtagaccgaatcaaaattggtcttaagggccaaaactgtcgcagatgcaaaacttagagggcggttttg 17248706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 20474869 - 20474941
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||||| |||| |||||||| | |||| | |  |||| ||||||| |||||||||||||| ||||||||    
T  20474869 tgccacgtcaacgtataccgagtcaacattgacattgggggccaaaactgccacagatgcaaaacttaggggg 20474941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 51362689 - 51362540
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    ||||||||||| |||||| ||||| ||||||| ||  |||| ||||||| ||||| |||||||| |||||||| |||||||||         |||||||     
T  51362689 tgccacgtcagtgtagactgagtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggggcggttttgtagtttttt--ttcttctt 51362592  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||||||||||||||| ||||||| ||||||||||| ||||||    
T  51362591 agggggccaaaatcgcaactttagaaaagttagggggctaaaactactatta 51362540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 53312437 - 53312290
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||| ||||| ||||||||||  |||| ||||||| |||||  ||||||||||||||||||||||||||         || ||||     
T  53312437 tgccacgtcagcgtagactgagtccaaattggccttgggggccaaaactgccacatgtgcaaaatttagggggtggttttgtagtttg----tttttctt 53312342  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||||||||||||  | ||||||| ||||||||| ||||||||    
T  53312341 agggggccaaaatcgcaactttgaaaaagttagggggctaaaaatgctatta 53312290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 47999696 - 47999597
Alignment:
Q  35 tggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||| |||||||  ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||||| |||| ||| || | |||||||||    
T  47999696 tggcacctcacttaaggtgccacgtcagcgtagaccgaatcaaaattggccttaggggtcaaaactgccacagatgtaaaacttatggagcggttttgta 47999597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 10059861 - 10060009
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||| ||||||||||||| ||||||||||   ||| ||||||| |||||||||||||| |||||||| |||||||||         || ||||     
T  10059861 tgccacgtcaacgtagaccgagtcaaaattggccttgagggccaaaactgccacagatgcaaaacttagggggcggttttgtagttttt---tttttctt 10059957  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||| ||||||||||||||  | || |||| || |||||||||||||||    
T  10059958 aaggggcaaaaatcgcaactttgaaaaaattaggggtctaaaactgctatta 10060009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 14449448 - 14449595
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    ||||||||||||||| |||||||| ||||||||||  |||| ||||||| ||||| |||||||| |||||| | |||||||||         || | ||     
T  14449448 tgccacgtcagcgtaaaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggagcggttttgtagtttt----ttttcctt 14449543  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||| |||||||||||||||||| || ||||||| ||||||||||| ||||||    
T  14449544 aagaggccaaaatcgcaactttggaaaagttagggggctaaaactactatta 14449595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 2654133 - 2654215
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||||| |||| ||||||||||  |||||||||||| ||||| |||||||| ||||||||  ||||||||    
T  2654133 tgccacgtcagcgtagaccaagtcaaaattggccttgggggtcaaaactgccacatatgcaaaacttagggggcagttttgta 2654215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 12719609 - 12719691
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||||||||||||||||| ||||||| ||  | || ||||||| |||||||||||||| ||||||||||||||||||    
T  12719609 tgccacatcagcgtagaccgagtcaaaattggtcttggaggccaaaactgccacagatgcaaaacttagggggtggttttgta 12719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 2016941 - 2016797
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||| |||||  ||||||| ||||||||  ||||||||         || ||||     
T  2016941 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacatgtgcaaaacttagggggcagttttgtagtct-----tttttctt 2016847  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctat 199  Q
       ||||||||||||||||||| || ||||||| ||||||||||||||||    
T  2016846 tgagggccaaaatcgcaactttggaaaagttagggggctaaaactgctat 2016797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 43074752 - 43074824
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||||||||||||| ||||| ||||||||||  |||| ||||||| |||||||||||||| ||||||||    
T  43074752 tgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttaggggg 43074824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 20112314 - 20112459
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||| ||||||||| |||||||| |  |||| ||||||| ||||| |||||||| || ||||| |||||||||         || ||||     
T  20112314 tgccacgtcagcgttgaccgagtcaaaattggctttgggggccaaaactgccacatatgcaaaactttgggggcggttttgtagta------tttttctt 20112407  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
      |||||||||||||||||||| || |||||||| ||||||||||| |||||    
T  20112408 tgggggccaaaatcgcaactttggaaaagttagaaggctaaaactgttatta 20112459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 25909637 - 25909491
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||  |||||  ||||||| |||||||| |||||| ||         || ||||     
T  25909637 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaacctccacaagtgcaaaacttagggggcggttttatagttt-----tttttctt 25909543  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | |||||||||||| ||||||| || ||||||| ||| ||||||||||||||    
T  25909542 agggggccaaaatcacaactttggaaaagttagggggttaaaactgctatta 25909491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 27978841 - 27978778
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaa 113  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||| ||||| ||||||||    
T  27978841 tgccacgtcagcgtagaccgagtcaaaattggccttgggggtcaaaactgccacaaatgcaaaa 27978778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 1420708 - 1420790
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| ||||||||| ||||||||||  ||||||| |||| ||||| |||||||| ||| |||| |||||||||    
T  1420708 tgccacgtcagcgttgaccgagtcaaaattggccttgggggtcataactgccacaaatgcaaaacttatggggcggttttgta 1420790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 35615367 - 35615318
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  35615367 ggggccaaaatcgcaactttagaaaagttagggggctaaaactgctatta 35615318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 2837049 - 2836967
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||| |||||| ||||| ||||||||||  |||| |||||||  |||| |||||||| |||||||| |||||||||    
T  2837049 tgccacgtcagtgtagactgagtcaaaattggccttgggggccaaaactctcacacatgcaaaacttagggggcggttttgta 2836967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 21597566 - 21597648
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||| |  |  |||| ||||||| ||||| ||||||||||||||||  |||||||||    
T  21597566 tgccacgtcagcgtagaccgagtcaaaattagttttgggggccaaaactgccacatatgcaaaatttaggggacggttttgta 21597648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 31553406 - 31553488
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||| ||| ||||||||||||||| ||||||||||  |||| ||||||| ||| ||||| ||||||||||||| | |||||||    
T  31553406 tgccgcgttagcgtagaccgagtcaaaattggccttgggggccaaaactgccatagatgtaaaatttagggggcgattttgta 31553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 1420586 - 1420539
Alignment:
Q  154 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  1420586 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 1420539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 6207338 - 6207486
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||| | |||||||||| |||| |||||| |||  |||| ||||| | ||||| |||||||| |||||||| |||||||||         |||||||     
T  6207338 tgccacattagcgtagaccaagtcaaaattgaccttgggggccaaaattgccacaaatgcaaaacttagggggcggttttgtagtttttt--ttcttctt 6207435  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | |||||||||||| |||||||||  || |||| ||||||||||||||||||    
T  6207436 a-ggggccaaaatcacaactttaggaaaattagggggctaaaactgctatta 6207486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 21957730 - 21957777
Alignment:
Q  154 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  21957730 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 21957777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 23759685 - 23759565
Alignment:
Q  75 aaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaaggggccaaaatcgcaactttaga 174  Q
    ||||||||||  |||| ||||||||| |||| |||||||||||||||  |||||||||         || |||| |||||||||||||||||||||||      
T  23759685 aaattggccttgggggccaaaactactacagttgcaaaatttaggggacggttttgtagtt------tttttcttaaggggccaaaatcgcaactttatg 23759592  T
Q  175 gaagttagagggctaaaactgctatta 201  Q
     ||||||| |||| |||||| ||||||    
T  23759591 aaagttagggggcgaaaactactatta 23759565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 29697671 - 29697590
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||| | ||| ||||||||||  ||   ||||||| |||||||||||||| |||||||| |||||||||    
T  29697671 tgccacgtcagcgtagactgggtcaaaattggcctt-ggaaccaaaactgccacagatgcaaaacttagggggcggttttgta 29697590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 38829914 - 38829971
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagat 107  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| ||||||||||| ||||    
T  38829914 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaactaccaaagat 38829971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 54855453 - 54855373
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgt 131  Q
    |||||||||||||||||||||||| |||||||| |  |||  ||||||||||| |||||||||| ||| ||||  |||||||    
T  54855453 tgccacgtcagcgtagaccgagtcaaaattggctttggggaccaaaactacca-agatgcaaaacttaaggggcagttttgt 54855373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 53061713 - 53061769
Alignment:
Q  51 gccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagat 107  Q
    ||||||||||||| ||||||||| ||||||| ||| |||||||||||| ||| ||||    
T  53061713 gccacgtcagcgttgaccgagtcaaaattggtctagggggtcaaaactgccaaagat 53061769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 2017051 - 2017098
Alignment:
Q  154 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  2017051 ggccaaaatcgcaactttaggaaagttatggggctaaaactgctatta 2017098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 8070775 - 8070708
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaattta 117  Q
    ||||||||||||||||||| |||  ||||||  ||| |||| ||||||| |||||||| |||||||||    
T  8070775 tgccacgtcagcgtagaccaagttaaaattgatctagggggccaaaactgccacagatacaaaattta 8070708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 8965680 - 8965759
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggtttt 129  Q
    |||||| ||| ||||||||||||| |||||| | |  |||  ||||||| |||||||||||||| |||||||| ||||||    
T  8965680 tgccacatcaacgtagaccgagtcaaaattgacattggggaccaaaactgccacagatgcaaaacttagggggcggtttt 8965759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 20118157 - 20118216
Alignment:
Q  142 ttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||| |||||||||||||| |||||||| | ||||||  ||||||||| ||||||||    
T  20118157 ttcttcttaaggggccaaaatcacaactttataaaagttaaggggctaaaattgctatta 20118216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 50769509 - 50769442
Alignment:
Q  54 acgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    |||||||||||| ||||||| |||||| ||| |||||  |||||| ||| |||||||||| |||||||    
T  50769509 acgtcagcgtaggccgagtcaaaattgaccttaggggctaaaactgccatagatgcaaaacttagggg 50769442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 23759738 - 23759820
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||| |||| |||||| ||||||||||  | || |||||||  ||||||| ||||| |||||||  |||||||||    
T  23759738 tgccacgtcagcttagatcgagtcaaaattggccttggaggccaaaactgtcacagatacaaaacttaggggacggttttgta 23759820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 33167976 - 33168058
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| ||||||| ||| |||| ||| |  |||||||  ||||||||    
T  33167976 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaactgccaaagatccaatacatagggggcagttttgta 33168058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 37832963 - 37833021
Alignment:
Q  157 caaaatcgcaactttagagaagttagagggctaaaactgctatt-agacttaatattat 214  Q
    |||||||||||||||||  |||||||  |||||||||||||||| || |||||||||||    
T  37832963 caaaatcgcaactttaggaaagttaggaggctaaaactgctattaagccttaatattat 37833021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 49185719 - 49185665
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccaca 104  Q
    ||||||||||||||||||| |||| ||||||||||  |||| ||||||| |||||    
T  49185719 tgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgccaca 49185665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 4796299 - 4796348
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||| |||| ||| || ||||||| ||||||||||||||||||    
T  4796299 ggggccaaaattgcaattttggataagttagggggctaaaactgctatta 4796348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 13826020 - 13825975
Alignment:
Q  60 gcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacag 105  Q
    |||| ||||||||| |||||||||||||||| ||||||| ||||||    
T  13826020 gcgttgaccgagtcaaaattggcctaaggggccaaaactgccacag 13825975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 14060873 - 14060938
Alignment:
Q  56 gtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    |||||| ||||||||||| ||||| ||||  |||| ||||||| ||||||||| |||| |||||||    
T  14060873 gtcagcatagaccgagtcaaaattagccttgggggccaaaactgccacagatgtaaaacttagggg 14060938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 21322884 - 21322944
Alignment:
Q  59 agcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagg 119  Q
    ||||||||||||||| |||||||| |  ||||||||||||  |||| |||||||| |||||    
T  21322884 agcgtagaccgagtcaaaattggcattgggggtcaaaactgtcacatatgcaaaacttagg 21322944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 21871557 - 21871633
Alignment:
Q  56 gtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||  ||||||   |  |||| ||||||||||| |||||||||| ||||| || |||||||||    
T  21871557 gtcagcgtagaccgagttaaaattgattttgggggccaaaactaccaaagatgcaaaacttaggaggcggttttgta 21871633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 21927418 - 21927494
Alignment:
Q  56 gtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||  ||||||   |  |||| ||||||||||| |||||||||| ||||| || |||||||||    
T  21927418 gtcagcgtagaccgagttaaaattgattttgggggccaaaactaccaaagatgcaaaacttaggaggcggttttgta 21927494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 51371613 - 51371541
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    ||||||||||| |||||||||||| |||||| | |  |||||||||||| ||| | |||||||| ||| ||||    
T  51371613 tgccacgtcagtgtagaccgagtcaaaattgacattgggggtcaaaactgccatatatgcaaaacttaagggg 51371541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 37813255 - 37813337
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||| |||||||||||||| |||||||| |||||||||    
T  37813255 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcggttttgta 37813337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 14880486 - 14880414
Alignment:
Q  49 atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    ||||||||||||| ||||||||||| |||| |||||  |||| ||||||| ||||||||||||||||||||||    
T  14880486 atgccacgtcagcatagaccgagtcaaaatcggccttgggggccaaaactgccacagatgcaaaatttagggg 14880414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 41487377 - 41487519
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaag 152  Q
    ||||||||||||||||||||| ||||||| ||  |||| ||||||  | |||| ||||||| |||||||| |||||||||         || |||| |||    
T  41487377 cacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaacagctacagttgcaaaacttagggggcggttttgtagttt-----tttttcttaag 41487471  T
Q  153 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    || | |||||||||||||| || ||||||||||||||||||||||||||    
T  41487472 gg-ctaaaatcgcaactttggaaaagttagagggctaaaactgctatta 41487519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 6807333 - 6807415
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||| ||||| |||||| |||   ||| ||||||| ||||| |||||||| ||||||||||||||||||    
T  6807333 tgccacgtcagcgtagacagagtcaaaattgaccttgagggacaaaactgccacaaatgcaaaacttagggggtggttttgta 6807415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 37940060 - 37939979
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||| ||  || | ||||||| ||||| |||||||| ||||||||||||||||||    
T  37940060 tgccacgtcagcgtagaccgagtcaaaattggtctt-ggtgccaaaactgccacatatgcaaaacttagggggtggttttgta 37939979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 29044713 - 29044855
Alignment:
Q  52 ccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaa 151  Q
    |||||||||||||||||||||| ||||||||||  |||| ||||||| ||||| |||||||| ||| |||   ||||||||         || ||||  |    
T  29044713 ccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttatgggacagttttgtaggt------tttttct-ta 29044805  T
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||| ||||||||| |||||||| |||||||| ||||||||||||||||||    
T  29044806 gggaccaaaatcgtaactttagggaagttagggggctaaaactgctatta 29044855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 3676271 - 3676374
Alignment:
Q  31 cacatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttt 128  Q
    ||||||||||| ||||||   |||||||||||||||||||||||| |||||||  |  |||  ||||||| |||||||||||||| |||| ||| |||||    
T  3676271 cacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggttttggggaccaaaactgccacagatgcaaaacttagtgggcggttt 3676370  T
Q  129 tgta 132  Q
    ||||    
T  3676371 tgta 3676374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 16982775 - 16982856
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||||||  |||| ||||||||||  |||| |||||||  ||||||||||||| |||||||| |||||||||    
T  16982775 tgccacgtcagcgtagactaagtcaaaattggccttggggg-caaaactggcacagatgcaaaacttagggggcggttttgta 16982856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 30539155 - 30539300
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||| |||||||| || |||||| | |  |||| ||||||| |||||||||||||| |||||||  |||||||||         || ||||     
T  30539155 tgccacgtcagcatagaccgaatcaaaattgacattgggggccaaaactgccacagatgcaaaacttaggggacggttttgtagttt-----tttttctt 30539249  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||| |||||||||||||||| |  |||||| |||||||||||||||||||    
T  30539250 aggggaccaaaatcgcaactttgggaaagtta-agggctaaaactgctatta 30539300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 32071272 - 32071321
Alignment:
Q  151 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  32071272 aggggtcaaaatcgcaactttagaaaagttag-gggctaaaactgctatta 32071321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 25897043 - 25896994
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||  | ||||||| ||||||||||||||||||    
T  25897043 ggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctatta 25896994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 45457158 - 45457226
Alignment:
Q  54 acgtcagcgtagaccgagtcgaaattgg-cctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    ||||||||||||| | |||| ||||||| |||  || ||||||||| ||||||||||||||||||||||    
T  45457158 acgtcagcgtagatcaagtcaaaattgggccttgggagtcaaaactgccacagatgcaaaatttagggg 45457226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 45177351 - 45177280
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    ||||||||||| |||||||||||| ||||| ||||   ||| |||||||  ||||||||||||| |||||||    
T  45177351 tgccacgtcagtgtagaccgagtcaaaattagccttgagggccaaaactgtcacagatgcaaaacttagggg 45177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 20853526 - 20853444
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||| |||||| | | || ||||||  ||  |||| ||||||| ||||| |||||||| ||||||||||||||||||    
T  20853526 tgccacgtcaacgtagatctattcaaaattgatcttgggggccaaaactgccacatatgcaaaacttagggggtggttttgta 20853444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 27545390 - 27545348
Alignment:
Q  159 aaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||| || |||||||| |||||||||||||||||    
T  27545390 aaatcgcaactttggaaaagttagacggctaaaactgctatta 27545348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 23702395 - 23702444
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||| |||||||||||||| |  ||||||| ||||||||||||||||||    
T  23702395 ggggctaaaatcgcaacttttggaaagttagggggctaaaactgctatta 23702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 28349568 - 28349617
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||| |  ||||||| ||||||||||| ||||||    
T  28349568 ggggccaaaatcgcaactttgggaaagttagggggctaaaactactatta 28349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 29657816 - 29657771
Alignment:
Q  87 ggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||||||    
T  29657816 ggggccaaaactgccacatatgcaaaatttagggggcggttttgta 29657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 12278985 - 12278937
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaact 98  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| |||||||    
T  12278985 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaact 12278937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 41602622 - 41602550
Alignment:
Q  60 gcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||| ||||||||| |||||||| || |||| ||||||| |||||   |||||| |||| |||||||||||||    
T  41602622 gcgttgaccgagtcaaaattggcttagggggccaaaactgccacatgggcaaaacttagcgggtggttttgta 41602550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 4049859 - 4049714
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaa-atttagggggtggttttgtannnnnnnncttcttct 148  Q
    ||||||||||||||||| |||||| ||||||||||   ||||||||||| ||||||||||||| | ||||||   |||||||||         || ||||    
T  4049859 tgccacgtcagcgtagatcgagtcaaaattggccttgagggtcaaaactgccacagatgcaaagacttagggaacggttttgtagttttt---tttttct 4049763  T
Q  149 caaggggccaaaatcgcaactttagagaagttagagggctaaaactgct 197  Q
     ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  4049762 taaggggccaaaatcgcaactttagaaaagttagtgggctaaaactgct 4049714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 18504393 - 18504311
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||| ||||| |||||||||| || || ||||||| ||||| |||||||| |||||||| |||||||||    
T  18504393 tgccacgtcagcgtagactgagtcaaaattggccttagaggccaaaactgccacatatgcaaaacttagggggcggttttgta 18504311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 35250285 - 35250123
Alignment:
Q  35 tggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||| |||||||  ||||||||||| |||||||||||| ||||||||||  |||  |||||||  || |||||||||| |||| ||| |||||| ||    
T  35250285 tggcacctcacttaaggtgccacgtcagtgtagaccgagtcaaaattggccttggggtccaaaactgtcaaagatgcaaaacttagagggcggttttata 35250186  T
Q  133 nnnnnnnncttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
             || |||| ||||| |||||||||||||||| || ||||||||||||||||||| ||||||    
T  35250185 gtt------tttttcttaagggaccaaaatcgcaactttggaaaagttagagggctaaaactactatta 35250123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 36580439 - 36580521
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| |||||| | |  |||| ||||||| ||||| |||||||| |||||||| |||||||||    
T  36580439 tgccacgtcagcgtagaccgagtcaaaattgactttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgta 36580521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 15107041 - 15106986
Alignment:
Q  156 ccaaaatcgcaactttagagaagttagagggctaaaactgctattagacttaatat 211  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| || ||||||    
T  15107041 ccaaaatcacaactttagacaagttagagggctaaaactgctattaaacctaatat 15106986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 15348100 - 15347958
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||| ||||||||||||||||| |||||| |||  |||| || |||| |||||||||||||| ||| ||||||||||||||         || ||||     
T  15348100 tgccacatcagcgtagaccgagtcaaaattgaccttgggggccataacttccacagatgcaaaactta-ggggtggttttgtagt-------tttttct- 15348010  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
     ||||| |||||||||||||||||  ||||||| |||||||||| |||||||    
T  15348009 taggggtcaaaatcgcaactttaggaaagttagggggctaaaacggctatta 15347958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 11374132 - 11374213
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||| ||| ||||||||||  || | |||||||| |||| |||||||| ||||||||| ||||||||    
T  11374132 tgccacgtcagcgtagaccgggtcaaaattggcct-tggcgccaaaactagcacaaatgcaaaacttagggggtagttttgta 11374213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 18186615 - 18186769
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||| ||||||| ||||| ||||||||||  |||  ||||||| |||||||||||||| ||| |||  |||||| ||         || ||||     
T  18186615 tgccacgtcaacgtagactgagtcaaaattggccttggggaccaaaactgccacagatgcaaaacttaagggacggttttatagtttt----tttttctt 18186710  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctattagacttaa 208  Q
    | |||| |||||||| |||||| || ||||||| |||||||||||||||||| ||||||    
T  18186711 agggggtcaaaatcgtaactttggaaaagttagggggctaaaactgctattaaacttaa 18186769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 28785922 - 28786067
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaag 152  Q
    ||||||||||||||||||||| ||||| ||||  |||||||||||| ||| | |||||||| ||| ||||  ||||||||         ||||||| ||     
T  28785922 cacgtcagcgtagaccgagtcaaaattagccttgggggtcaaaactgccataaatgcaaaacttatggggcagttttgtagtttttt--ttcttcttaa- 28786018  T
Q  153 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||| ||||||| || ||||||  ||| ||||||||||||||    
T  28786019 gggccaaaatcacaactttggaaaagttatggggttaaaactgctatta 28786067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 17876316 - 17876237
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||| |||| |||||| ||||||||||  | || ||||||  |||||||||||||||||||||||  ||||||||    
T  17876316 cacgtcagcatagatcgagtcaaaattggccttggaggccaaaaccgccacagatgcaaaatttagggggcagttttgta 17876237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 36903412 - 36903341
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggg 121  Q
    ||||| |||||||||||||||||| ||||||||||   ||| ||||||| ||||||||| |||| |||||||    
T  36903412 tgccatgtcagcgtagaccgagtcaaaattggccttgagggccaaaactgccacagatggaaaacttagggg 36903341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 41243792 - 41243648
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||| ||||||||||||| ||||||||||  |||   |||||| ||||| |||||||| ||| |||| |||||||||         || ||||     
T  41243792 tgccacgtcaacgtagaccgagtcaaaattggccttggggacaaaaactgccacaaatgcaaaactta-ggggcggttttgtagtt------tttttctt 41243700  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||| ||||| |||||||| || ||||||| ||||||||||||||||||    
T  41243699 agggggctaaaattgcaactttggaaaagttagggggctaaaactgctatta 41243648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 6792061 - 6792106
Alignment:
Q  156 ccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||    
T  6792061 ccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 6792106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 45718045 - 45717980
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    ||||||| ||||||||||||| ||||||  || |||||||||||||  ||||||||||||| ||||    
T  45718045 cacgtcaacgtagaccgagtcaaaattgatcttaggggtcaaaactgacacagatgcaaaacttag 45717980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 8074024 - 8073961
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaa 113  Q
    ||||||||||||| ||||||| || ||||||||||  |||| ||||||| ||||| ||||||||    
T  8074024 tgccacgtcagcgaagaccgaatcaaaattggccttgggggccaaaactgccacatatgcaaaa 8073961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 6726419 - 6726500
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||||||||| || ||||| |||||| |||  |||| ||||||| |||||  ||||||| |||||||||| |||||||    
T  6726419 tgccacgtcagcgtaaactgagtcaaaattgtcct-tgggggcaaaactgccacatgtgcaaaacttagggggtgattttgta 6726500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 15107156 - 15107238
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| |||| |||||||||||| |||||||| |  | || ||||||| ||||| |||||||| |||||| | |||||||||    
T  15107156 tgccacatcagtgtagaccgagtcaaaattggcattggaggccaaaactgccacaaatgcaaaacttagggagcggttttgta 15107238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 21505878 - 21505927
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||  | ||||||| || |||||||||||||||    
T  21505878 ggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 21505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 28472442 - 28472394
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  28472442 ggggtcaaaatcgcaactttggaaaagttag-gggctaaaactgctatta 28472394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 47909747 - 47909698
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||| |||||||||||||| |  ||||||| ||||||||||||||||||    
T  47909747 ggggctaaaatcgcaactttgggaaagttagggggctaaaactgctatta 47909698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 17931988 - 17932036
Alignment:
Q  153 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||| || |||| ||  |||||||||||||||||    
T  17931988 gggccaaaatcgcaactttggaaaagtgaggaggctaaaactgctatta 17932036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 23826166 - 23826102
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaattta 117  Q
    |||||||||||||||||| || ||||||  ||  |||| ||||||| ||||| ||||||||||||    
T  23826166 cacgtcagcgtagaccgaatcaaaattgatcttgggggccaaaactgccacaaatgcaaaattta 23826102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 553 - 406
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctc 149  Q
    |||||||||||  ||||||||||| ||||||| ||  |||| ||||||| ||||| ||| |||| ||||||||||||||||||         || ||||     
T  553 tgccacgtcagtatagaccgagtcaaaattggtcttgggggccaaaactgccacatatgtaaaacttagggggtggttttgtagtttt----tttttctt 458  T
Q  150 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    | ||||||||||||||||||||   |||||||| |||||||| |||||||||    
T  457 agggggccaaaatcgcaactttgaggaagttagggggctaaagctgctatta 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 77011 - 76930
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||| ||||| |||||||| |||||||| || ||||||    
T  77011 tgccacgtcagcgtagaccgagtcaaaattggcct-tgggggcaaaactgccacaaatgcaaaacttagggggcggctttgta 76930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 19199 - 19275
Alignment:
Q  56 gtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||| | ||||||||||  |||| |||||||||||||  ||||||| |||||||| |||||||||    
T  19199 gtcagcgtagaccgagccaaaattggccttgggggccaaaactaccacatgtgcaaaacttagggggcggttttgta 19275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 19602 - 19651
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||||||||||||||||||  | ||||||| || |||||||||||||||    
T  19602 ggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 19651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 145497 - 145421
Alignment:
Q  56 gtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||| ||||||||||| ||||||||||  |||| ||||||| |||||||||||||||||| |||| || ||||||    
T  145497 gtcagcctagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaatttaaggggcggctttgta 145421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 9558 - 9479
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    ||||||||| ||||||||||| ||||||||||  ||||  |||||| ||||| |||||||| |||||||  |||||||||    
T  9558 cacgtcagcctagaccgagtcaaaattggccttgggggctaaaactgccacatatgcaaaacttaggggacggttttgta 9479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 46239 - 46321
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||||||| ||||| |||||| |||  |||| |||||||  ||||||||||||| |||| |||  ||||||||    
T  46239 tgccacgtcagcgtagactgagtcaaaattgaccttgggggccaaaactgtcacagatgcaaaacttagagggcagttttgta 46321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 3692 - 3643
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  3692 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 3692 - 3643
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  3692 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 25155 - 25204
Alignment:
Q  152 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 201  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||||||||    
T  25155 ggggctaaaatcacaactttagaaaagttagaaggctaaaactgctatta 25204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 25043 - 25145
Alignment:
Q  31 cacatggcaccacacttaa--tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttt 128  Q
    ||||||||||| ||||||   ||||||||||||| ||| |||||| |||||||  |  |||| |||||||||| || |||||||| |||||||| |||||    
T  25043 cacatggcacctcacttagagtgccacgtcagcgaagatcgagtcaaaattgg-ttttggggccaaaactaccgcatatgcaaaacttagggggcggttt 25141  T
Q  129 tgta 132  Q
    ||||    
T  25142 tgta 25145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 9704 - 9772
Alignment:
Q  53 cacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttaggggg 122  Q
    |||||||||||||| |||||| ||||||| ||  |||| ||||||| |||| ||||||||||||||||||    
T  9704 cacgtcagcgtagaacgagtcaaaattggtctt-ggggccaaaactgccaccgatgcaaaatttaggggg 9772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2053 - 2005
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaact 98  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  2053 tgccacgtcagcgttgaccgagtcaaaattggtctagggggtcaaaact 2005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 20063 - 19995
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    |||||||| |||||||| |||||| |||||||| |  |||| ||||||| |||||||||||||| ||||    
T  20063 tgccacgttagcgtagatcgagtcaaaattggctttgggggccaaaactgccacagatgcaaaacttag 19995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 9488 - 9433
Alignment:
Q  49 atgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccaca 104  Q
    ||||||||||||||||||||||||| ||||||  ||  |||| |||||||||||||    
T  9488 atgccacgtcagcgtagaccgagtcaaaattgatcttgggggccaaaactaccaca 9433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 199818 - 199736
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttagggggtggttttgta 132  Q
    |||||||||||||| ||||||||| ||||||| ||| |||| ||||||| ||| |||| ||| |  |||||||  ||||||||    
T  199818 tgccacgtcagcgttgaccgagtcaaaattggtctagggggccaaaactgccaaagatccaatacatagggggctgttttgta 199736  T

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Target: scaffold0578 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 3225 - 3157
Alignment:
Q  50 tgccacgtcagcgtagaccgagtcgaaattggcctaaggggtcaaaactaccacagatgcaaaatttag 118  Q
    |||||||||||||||||||||||| |||||| |||   ||| ||||| | ||||| |||||||| ||||    
T  3225 tgccacgtcagcgtagaccgagtcaaaattgaccttgagggccaaaattgccacaaatgcaaaacttag 3157  T

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