View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_high_21 (Length: 374)
Name: NF12039_high_21
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 35346333 - 35345982
Alignment:
| Q |
9 |
cacagacacaacatcaacactgatgcataaactcaatgtctagacaccggcaaaaatttgaaaaatcagtgatagaatgttattacaaagtgtcggtgct |
108 |
Q |
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| T |
35346333 |
cacagacacaacatcaacactgatgcataaactcaatgtctagacgccggcaaaaatttgaaaaatcagtgatagaatgttattacaaagtgtcggtgct |
35346234 |
T |
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| Q |
109 |
acatagattcctagtagcatgttttccaagtgaaagcctcgacaatgttcattcaaatgaaatatttaacagtattcctttaagtgttaatctaattaat |
208 |
Q |
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| T |
35346233 |
acatagattcctagtagcatgttgtccaagtgaaagcctcgacaatgttcattcaaatgaaatatttaacagtattcatttaagtgttaatctaattaat |
35346134 |
T |
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| Q |
209 |
cagttgaaataaaaaaccaaatgtgaaaggttttacactttcactaggttggaattctactgcatgaacaattactaagaaggaggatacacaatcaaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35346133 |
cagttgaaataaaaaaccaaatgtgaaaggttttacactttcactaggttggaattttactgcatgaacaattactaagaaggaggatacacaatcaaag |
35346034 |
T |
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| Q |
309 |
gaaacaggnnnnnnnnggattagaatcaaaattctaaaggcagtgaaaatatt |
361 |
Q |
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| T |
35346033 |
gaaacagg-aaaaaaaggattagaatcaaaattctaaaggcagtgaaaatatt |
35345982 |
T |
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