View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12039_high_22 (Length: 364)
Name: NF12039_high_22
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 1558179 - 1558490
Alignment:
| Q |
11 |
tgagatgaagcaaatgtagtaacatgagtttttacagctgtcatgtggttttatcaagtttcaaattattgggttataaaaaatagtgctaatggagttt |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1558179 |
tgagataaagcaaatgtagtaacatgagtttttacagctgtcatgtggttttatcaagtttcaaattattgggttataaaaaatagtgctaatggagttt |
1558278 |
T |
|
| Q |
111 |
aaattatgcaggatttcatttaagattctaacatataagatgtttaggtttaaaaaattcccttctatgaagtttttcatt-nnnnnnntgctattcctg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1558279 |
aaattatgcaggatttcatttaagattctaacatataagatgtttaggtttaaaaaattcccttctatgaagtttttcattaaaaaaaatgctattc--- |
1558375 |
T |
|
| Q |
210 |
ttaatctgtttgatgctgtgccaaccccttttatgcattatgagatgaatttccaattgtcttatgagaagactctgacttcagatgaagttgattctag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1558376 |
-----ctgtttgatgctgtgccaaccccttttatacattatgagatgaatttccaattgtcttatgagaagactctgacttcagatgaagttgattctag |
1558470 |
T |
|
| Q |
310 |
c-tttttggtaagtgaacta |
328 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
1558471 |
cttttttggtaagtgaacta |
1558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 38981800 - 38981846
Alignment:
| Q |
97 |
tgctaatggagtttaaattatgcaggatttcatttaagattctaaca |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38981800 |
tgctaatggagtttaaattatgcaggatttaatttaagattctaaca |
38981846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University